RNA id: AMCG00017542


Basic Information

Item Value
RNA id AMCG00017542
length 2975
RNA type mRNA
GC content 0.47
exon number 27
gene id AMCG00017542
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9021133 ~ 9034005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATACCACGTTAAAAACATTGTTCCTCTCATATGACAAAACCACATTCAAAACGCGCTGCGCTGAAATAAGAGCATGCGGAAGATCTATAGTGTTTTACTGCGGTCGTGACCTGAAAACCAAGGCCATGTAAATGGCGCGATACATAAACAGAGAttatgaaatagaaaataatttattttattcttccctCCTCCGATTTCAACGAAACCTGCACGGTTCTCTTTTGTGAAACTAGAACGgtgCCAAAGATGCCTGCATTTCGTCAAGTTGGAGAGAAGCAGCTTCCTAACCCGATCCTGTTCATGGTCTGGTCTCCAAAGAGAGACCTCATTGCCCTTGCAAATCAAGCTGGCGAGCTTTTGTTGCACCGCCTGGCAAACTTTCAGCGGGTCTGGACTTTACCTCCGAATGAAAATACTGGCAAAGAAATCACTTCACTAGCATGGAGACCAGATGGCAAAATTTTAGCCTTCAGTGTTGGGGACACTAATCAGGTGATTCTTTGTGATGTGGAGAAAGCAGAAATCTTGCACATTTTCCCAGTCGAAACCCCAGTATCATGTATGCACTGGATGGAAGTTTCAGACGATAACAGTGTCCTCTCATCATTTGATAATGCTGAAGATGAATCCGATTTTTTCCTGCCTAAGTTACCAACTCTTCCAAAAAGCTACAGCACAGCATCCAAAATGTCCAGGCTAAACATACTCGTTCTTGGCGGCAACTCTGGGTTTATTGAGCTCTATGCCTATGGAATGTACAAGATCGCTACACTGACTGAGGTTGCAGGGACCTGTTGCAGTTTGTGCCTCTCCAGTGACCTGAAATCCCTGTCAGTTGTCACAGAAATCAAATCCACTAACGGCGACCCCGAAATCCGATATAATCAGCTCGACACCAGCCTGCTGTCTGACTACCTCCCTGAAGTCACTCGAATGGCAAGGAAGTTCACTCACATCTCCACACTGCTACAGtaccAGAAGCAGTCACTGACGTGTATGTGTGAAGCTTGGGAAGATATCCTAATGCAGATGGACTTGCGGCTTACGAAATTTGTTCAGGAAAAGAATACGGAAACATCAGTTCAGGATGAATTCCTTGACCTTCTCTTGTGGGGGAAGTCAAGTCCTGAACTTCAAGCACTGCTAATGAACCAGCTGACAGTAAAGGGCCTGAAAAAGCTTGGACAGTCTATTGAATCGTCTTACTCCAGTATTCAGAAACTGGTGATCAGCCACCTACAGAGTGGCTCAGAGGCTTTGCTGTACCACCTAAGTGAACTGAAGGGAATGGCCCTGTGGAAACAGAAGTACGAACCCCTCGGCCTCGATGCGTCTGGAATAGAAGATGCAATAACAGCTGTGGGGTCCTTCACACTCAAGGCAAATGAACTTTTACAGGTCATAGACAACAGTATGAAAAACTTCAAAGCATTTTTCAGATGGCTGTATGTAGCCATGCTGAGGATGTCTGAAGATCATGTGCTTCCAGAGTTAAATAAGATGACGCAGAAAGATATCGCCTTCGTGGCAGATTTCCTCTCAGAGCACTTTAGTGAGCAACCAGAACTCTATGACCGGAAAGGAAAATACTTCAACGTGGAAAGGGTTGGCCAGTACCTgaaggatgaggatgaggatcTGGTGTCTCCCCCCAACACTGAGGGGAATCAGTGGATCAGCTTCCTTCAGAGCAGCACGCaaagtCCCCTGCTGTTTCCATATTACCCTCAGAAATCCCTGCATTACGTCAAGAGGATGATGGAGGGGGTTATTGAGTTGTGTCTCCAGAAGCCTGCTGAAGTGATTGGACAGTCTGTGAAAGAAGCTGTTAGTATGGCACTCTACACAGTGCCAGCGAGGTGGAATGACAAAAAATCTGGCATGCATTACATAGTGTTCACCATGCCAGAGATATCACCCTGTAAACTGTACATAATGAGGAGAGCAACTGACCCATCCAGGTCTGTCACTAATGGCTTGTTATCCCTTGACCTTGGGAGTCTTCTATCCAGCAGTGCGGATGAGAGTGCAGAAGCCAGCCAGTACAGCTGCCTCGACGCCCGTCTGTATGATGACGAGACCCTGACAGTGGTCCTGAAGGAGGCCGTGGACGAGGACAAGGGCAGGATGCTGGCCCAGCTGCCGCTATCCTCGGTGTACATCGCTGAAGAGGAGTTTACATGGGACCCGGTCTTGAGACTGGACCAGCAGAGTGCTGATATCCCAGTCCAGAGCTTGGTCCTGGAGAACCAGTGGAGGACAATGGAAAACATGAAGGCACAGTATGTAGCAGTCAATGGGATCCGTAAAGTGTCCTGTGTGCTGAGCTCGAACCTGCGGCACATCCGAGTGTTTGAGATGGACGTGGAGGACGAGGAGTAAGAGGACAGAACCGAGTCCGGGTTAGCAGTGGTGATGTGGACAGGACGGGGACCCTGAAGGAGTATTCAGGGAAACCCCTTTACTTGACAGAGGAATAACCTCCCACCCCTGAACACAGACCCTATAGGGAAATGCACCACGATTCAGAGGGCGTTCCTGAAACTGCTATGAACACTTTTGCATTTGAGGGGAATCTCGCTTGACTGCAGTGTCTGACATGGGCAACCGGTGACAGGACAAATCCAATAAAGAATGATTCTTTGAGCTTTTTGAAAGTGATTTGTTGTCAACCCATTTTAGTGCACACACTGTCAGTATGTTAGAACTACCCCCATCCAACCCCAGAAAGAATTACTTGCCAGCAAATTAgaattgcatttcctttttttttactttacttgcATATTATTCAGTTAATGTACTGTTAACTTACTGGTGTTCATTCTATAACTAccaacacccacacacatttacatgGATTGGGTAGCTGACTGATATAGTCAGATGTGGCACCACTGTCAGCAGCTTTCTTTACCAGATGgtctagagcagtggttttcaaacaagtcctggagtaccccctgccctg

Function

GO: NA

KEGG:

id description
K03351 APC4, ANAPC4; anaphase-promoting complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 285901 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 415507 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 639463 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 734016 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 791572 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 560925 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 598640 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 628559 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 641541 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 643466 9677471 ~ 9680221 (-) True G91301
AMCG00017541 mRNA downstream 7961 8977238 ~ 9013172 (-) True AMCG00017541
AMCG00017540 mRNA downstream 44468 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017539 mRNA downstream 48892 8970191 ~ 8972241 (-) True AMCG00017539
AMCG00017535 mRNA downstream 177675 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017537 mRNA downstream 186766 8815050 ~ 8834367 (-) True AMCG00017537
AMCG00017546 mRNA upstream 116839 9150844 ~ 9156267 (-) True AMCG00017546
AMCG00017547 mRNA upstream 130856 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017549 mRNA upstream 194995 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017548 mRNA upstream 211211 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017550 mRNA upstream 308109 9342114 ~ 9372079 (-) True AMCG00017550
TU113686 other downstream 265226 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 506178 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1024538 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1188541 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1907952 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1327295 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5399153 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6832942 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6996397 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6996451 16030456 ~ 16030905 (-) False G92129

Expression Profile