RNA id: AMCG00017544



Basic Information


Item Value
RNA id AMCG00017544
length 1044
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00017544
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9086577 ~ 9103203 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGTCTGCCGACAGAGTCATGGCTGCTCATGGTCCTGCATCCTTTGTTCGCTTACGTATACCTCACACCGAGGTGGTTCTGTGAGGGCAAAGAGCTGCTCAATTCGCCCGACATTCAGATCTCCCAGGATGTGGATCTGCACACGTTAGTCATCACCGAAGCTTTCGAAGACGACACAGGACGCTACACTTGTGTGGCTTCAAACGCTTTTGGATCAGATAATACATCAGCTGAAGTTTATATTGAAGGGGCTTCATCTTCAGATTCGGAAGGAGAAGGATCCACGCTGAAAGACAAAACAGGAGCCATGCCACAGGTGCAGAAGAAAACcacctctgtgtctctcactaTTGGTTCCCCGACAGCCAAGAGCCCAGAGATCCAGCCGCATCGGTCCACCCTTGTCcagcccctctctcttcctccccagCGGCCATTACAAGACGCCACAGCATCCGAGGGCCAGGTTGTGGTCCTGGAGTGCAGAGTGAAGGGTAGCCCACCCCTGCAGGTGCAGTGGTTCAGACAAGGAGAGGAGATCCAAGACACGCCGGACTTCAGGATCCTGCAGAAAAAGGAGATCTGCACGCTGGTGATCGCAGAGACCTTTCCGGAAGATGGAGGCACTTTCAGCTGCACGGCCAGTAATCAGTTTGGCTCAGTCAGCTGCTCCGCACAGCTGACTGTCGGCTCAGGTAATGATGAGCCTTTTAGTAATGGAGTTTCTGCTGCTGATGAAGCTTTGGAAGACCTCCAGTCCTTCCCGCCTCCACCTCCACCAACAGAGATCAGCTCTCTGGAGCTCCCACCGAAGAAGGCAAGTGGGGAGAGCCTGCATGTCAATGAGCTGGAAATCTGGCCCAGTGCGACAGCCCTGCAGCTGCTTCAGCTCAGTCCGACTGTGGAGAAGACCAACGGGGTCCACAGCAGCCTGCAGGCCAATGGGGTTCCCAATGGGAAGAGCACAGCCCCCCCCATGCCACGGATCCCATCCCCTGTGAAGGAACCCCCAATGCCCACCAAGCCCAAGCCCAAACTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113726 lncRNA upstream 245539 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 261740 8819713 ~ 8824837 (+) True G91135
TU113695 lncRNA upstream 302488 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 353945 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 799849 8286292 ~ 8286728 (+) True G91004
TU113913 lncRNA downstream 1063327 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 1194199 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 1464975 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1636900 10740103 ~ 10764336 (+) False G91334
TU113941 lncRNA downstream 1660637 10763840 ~ 10764336 (+) True G91334
AMCG00017543 mRNA upstream 65535 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017538 mRNA upstream 117099 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017534 mRNA upstream 277583 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017533 mRNA upstream 280109 8799335 ~ 8806468 (+) True AMCG00017533
AMCG00017527 mRNA upstream 321674 8752365 ~ 8764903 (+) True AMCG00017527
AMCG00017545 mRNA downstream 24560 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017551 mRNA downstream 154003 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017553 mRNA downstream 527198 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017552 mRNA downstream 790025 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017560 mRNA downstream 2286986 11390189 ~ 11402671 (+) True AMCG00017560
TU113671 other upstream 332796 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 397171 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 953723 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1393230 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1414727 7668183 ~ 7671850 (+) True G90877
TU113887 other downstream 416570 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 2776411 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 4933673 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 5974122 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 6009407 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile