RNA id: AMCG00017545


Basic Information

Item Value
RNA id AMCG00017545
length 2127
RNA type mRNA
GC content 0.59
exon number 12
gene id AMCG00017545
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9127763 ~ 9147339 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGATCCAGATCAGCTGAAACAACTGCAAAACCAGATTCTATTGGAGCAGCAAGAGGCAGCTAATTGGCTGCAGCAACAGGACATCCCGCCTCTTCAGGATCAAGCTCCGCCTCCCTCTCCGCCTCTCCCGCCACCTCCCTCCTTCCAAGAGCTCGAGAGCAGCCAGCAATCCCCAGCCCAGATGAGCCTCCTCAACTCCCACGGCCCGACCGGCAGCATGCAGACCAGCAGTACTTTCAACTACGCGCGGCCCAAGCAGTTCATCGCCGCCCAGAATTCAGGGGGCCCCTCCTCGGGGTACATGACCCCGTCGTCCGGCTCCTCGGGCTCCAGTTTGCCCTCTCCCCTCTCGCCCTCGACCCCTCACAAGGAGTTCAGCAAAGTCAGCCTGCCTCCCTTCCAGCAGTCGTATTCGAATAAGAGCGACAGTATCGGCTCCCCGGTGTcaccctccttccctcccccacctccacctTTCCTCAGCCCAACGTCCTCCTTCACGGGTCAAGACAACTTCGCCTTGCCCCCGCCACCGCCCCCCCTGCCCCTCACCAGCCCCACACTGTCCCACTCTGAGGAGAGGAACGCCCCCTTCTCTGGACAGCAGTCCCCAGCTGGCTTCCTCAGCTCGGTGCTCCCCTCCCAGCATCCCCCGCCGCCTCCGGTCAATGCCCTGGGCCTCCCTAAAGGAAGCAATACTGTAGGGTTCCCAAGAAAGACTGGCAGGACTCCACGGATAGCTTCAGACTCCGAGATTCAGGGCACCAAGGATGCGGTCATTCAAGACCTCGAGAGGAAACTGCGCTTTAAAGAGGAACGCTTAAGCAATGGACAGCAGAGGTTAACATATGAGGAGAAGATGGCCCGGCGACTGCTGGGGGCTGACAGTGCTGCCACTGTCTTAAATGTACAGGAGACGGAAGAGGAGCCCCCCACGCAGgagtACAAGGTGTCCAGCTTCGAGCAGCGCCTCATCAGCGAGATCGAGTTCCGTCTGGAGCGCTCCCCCGTGGAGGAGTCGGACGACGAGGTGCAGCACGACGAGGGGGATGCGCCGGGCCAGCAGGTGGCGCCCTTCTTTGACCTTAAACTCAAGCACTACAAGGTCTTCGAAGGCATGCCCGTCACCTTCTCCTGCAAGGTCATCGGAGACCCCAAGCCAAAGATTTACTGGTTCAAGGATAGCAAGCAGATCTCCAAAGGGAGTGAGCACTACAGGATCAGCCGGGAGCCGGATGggcCGGACAAGCTGCACTGGCAGGATGATGGTGCAGGCAGTGAACCAGAGGGGAAGGAGCACACGATCCCCTCCAGGACACATCAGGAGGGTGTGTTTGCTCTCAGACCTAGGTCCAGGTCCCGAGACAGCGGGGATGAGAATGACAACATCCAGGAACGCCACTTCCGACCTCACTTCCTGCAGGCACCTGGGGACCTGATTGTCCAGGAGGGCAAGTTGTGCAGGATGGACTGCAAGTTGGACGGCCAAACGATTCGCCCAGACAACTCTCACAAAATGCTGGTGAGGGAGAACGGCGTGCACTCCCTGATCATCGAACCAGTCACCTCCAGGGACGCCGGCATCTACACCTGCATAGCAAGCAACCGAGCCGGGCAGAACTCCTTCAATCTGGAGCTCATAGTCGCAGCCAAAGAGATGCACAAAGCCCCCTGCTTCGTGGAGAAGCTGCAGAACACAGGCGTGGCCGAGGGTTTCCCCGTGAGGATGGAGTGCCGAGTCTCGGGGGTGCCGTACCCTCAGATCTTCTGGAAGAAGGAGAACGAATCCCTCACTCACAACACTGACCGAGTGAGTATGCACCAGGACAATTATGGCTACATCTGTATGATCATCCAGCCAGCCACAAAAGAGGATGCTGGTTGGTACACTGTGTCTGCCAAGAACGAGGCTGGGATTGTGTCAAGCACTGCCAGGCTGGATGTCTACACTCAGTGGCAGCAGCACTCGCAGACCCCCAAGCCCAAGAAGGTGCGTCCGTCCACCAGCCGCTACGCCGCGCTGACGGAGAAAGGACTTGACGTGAAGGCGGCCTTTTTCCCCGAAGCCAACCCTGCCCACCTGCTGCCGCAGCCCGAGCTGGTTGAGAGCGACGACCTGTAA

Function

GO: NA

KEGG:

id description
K22029 PALLD; palladin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113726 lncRNA upstream 286725 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 302926 8819713 ~ 8824837 (+) True G91135
TU113695 lncRNA upstream 343674 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 395131 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 841035 8286292 ~ 8286728 (+) True G91004
TU113913 lncRNA downstream 1019191 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 1150063 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 1420839 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1592764 10740103 ~ 10764336 (+) False G91334
TU113941 lncRNA downstream 1616501 10763840 ~ 10764336 (+) True G91334
AMCG00017544 mRNA upstream 24560 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017543 mRNA upstream 106721 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017538 mRNA upstream 158285 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017534 mRNA upstream 318769 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017533 mRNA upstream 321295 8799335 ~ 8806468 (+) True AMCG00017533
AMCG00017551 mRNA downstream 109867 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017553 mRNA downstream 483062 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017552 mRNA downstream 745889 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017560 mRNA downstream 2242850 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017561 mRNA downstream 2360537 11507876 ~ 11525014 (+) True AMCG00017561
TU113671 other upstream 373982 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 438357 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 994909 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1434416 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1455913 7668183 ~ 7671850 (+) True G90877
TU113887 other downstream 372434 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 2732275 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 4889537 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 5929986 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 5965271 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile