RNA id: AMCG00017546


Basic Information

Item Value
RNA id AMCG00017546
length 1354
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00017546
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9150844 ~ 9156267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTAGTCCTGGGTATTTGAGCTGCTCAGGTGAATGAAAGCCACGCACTCTCTGCCGCTCTGATTTCTATGGCCTTCGTGCGGGTCTCGACTGAGCTGTGGTTGACTGTTTTCTGGCTCCCCCTGCTGGTTCGCCACGGAAGTACAGCATGTCCAAAGTGTGTGCCGTGTTCGGGGGCTCCAGGGGGATCGGGAAGGCCGTCTCTCAGTTGCTGGCTAAGAAGGGACATCGAGTCATTGTCGTTGCAAGAAATCTCGAAGCTGCCCAGTCCACTGCCACGTCTTTGGGAGAGGACCACCTTGCTCTGAGCTGTGATGTTTCGAAAGAACACGACGTCCaggaaacatttgaaaagattCAGTCGAGCTGTGGAAACATTAACTATCTGGTCAATGCAGCCGGTCTGAACAGGGACGGGCTGTTGTTGCGGACCAAGACAGAAGACATGGTCACCCTGCTGCACACCAACCTCCTGGGCGCCATGCTGACCTGCAAAAGTGCTTTAAGAGGCATGCTGCACAACCAAGGAGGAGCCATTGTAAATATAGGCAGCGTCGTTGGGCTGAAGGGGAATGCGGGGCAGAGTGTGTACAGCGCCAGTAAGGCCGGGCTGGAGGGCTTCACACGCTCTCTTGCCAAGGAAGTGGCTGCGAGAAACATTCGGGTTAACTTGGTCGCTCCAGGCttcatacacacagacatgacGGCGGGCATGAACGTTGAGGAGCTGAGCAGGAACATCCCACTGGGACGCTTCGGGGAGCCCCAAGAGGTGGCCCAGGCCGTCCTCTTTCTCCTGGAGTCTCCCTACGTTACTGGGCAGGTTCTGGTTGTGGATGGTGGACTTCAGCTGGCCATGTAGACTCTAatgtttctgtctgtttctggTGAGAACAGGATGCTCTTCTTGGGTGAGCTCTTGATTTCTGTTCCTCAGGCAATAGCAGAGCACAATACGCTGCAGGCTGTATTTAAACCTTGAATGAAATAATGTATCGCTCATGATAGGACTTAGGAATGCAGAGGACAATTAAAGAAATTATAACTGATGCCATGATGCTTTATGTGAGAATATTGTGACTGAATCTAAGAGGGACATTTTATCAACGGAGCAGCTTATCTATGCTGCCACCAAAGGCAAATGGCTGCTCTGCTCATAGATAAGTCTGATCAGTAATGGTTCAGGGTATCTTATACATGTGTCATCGATTTACTTATTTCAGGATTTTATTGACAATATTTGAATGTCTGAAACAGTGCTGTAATACTGATGTCATaccataaaaaaattataactcACTCATGTCTGGTTTAAGTACCACagtgacattaaaataacagcacAAAGCTGCTG

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00059 fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 415612 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 545218 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 769174 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 863727 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 921283 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 438663 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 476378 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 506297 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 519279 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 521204 9677471 ~ 9680221 (-) True G91301
AMCG00017542 mRNA downstream 116839 9021133 ~ 9034005 (-) True AMCG00017542
AMCG00017541 mRNA downstream 137672 8977238 ~ 9013172 (-) True AMCG00017541
AMCG00017540 mRNA downstream 174179 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017539 mRNA downstream 178603 8970191 ~ 8972241 (-) True AMCG00017539
AMCG00017535 mRNA downstream 307386 8836853 ~ 8843458 (-) True AMCG00017535
AMCG00017547 mRNA upstream 8594 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017549 mRNA upstream 72733 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017548 mRNA upstream 88949 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017550 mRNA upstream 185847 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017554 mRNA upstream 339461 9495728 ~ 9547314 (-) True AMCG00017554
TU113686 other downstream 394937 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 635889 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1154249 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1318252 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 2037663 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1205033 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5276891 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6710680 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6874135 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6874189 16030456 ~ 16030905 (-) False G92129

Expression Profile