Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00010936 |
| length | 921 |
| lncRNA type | antisense_over |
| GC content | 0.37 |
| exon number | 3 |
| gene id | XLOC_004731 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 25201543 ~ 25214727 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | biological_process |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0033596 | TSC1-TSC2 complex | cellular_component |
| GO:0004535 | poly(A)-specific ribonuclease activity | molecular_function |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009368 | lncRNA | upstream | 130411 | 25073305 ~ 25075120 (+) | False | XLOC_004728 |
| TCONS_00010739 | lncRNA | upstream | 130411 | 25073518 ~ 25075120 (+) | True | XLOC_004728 |
| TCONS_00010738 | lncRNA | upstream | 261027 | 24944172 ~ 24944504 (+) | True | XLOC_004726 |
| TCONS_00010737 | lncRNA | upstream | 1346099 | 23812530 ~ 23859432 (+) | False | XLOC_004717 |
| TCONS_00010736 | lncRNA | upstream | 1426354 | 23778952 ~ 23779177 (+) | True | XLOC_004716 |
| TCONS_00009376 | lncRNA | downstream | 97291 | 25312018 ~ 25420721 (+) | False | XLOC_004733 |
| TCONS_00010938 | lncRNA | downstream | 165362 | 25380089 ~ 25430371 (+) | False | XLOC_004733 |
| TCONS_00010740 | lncRNA | downstream | 165410 | 25380137 ~ 25387670 (+) | False | XLOC_004733 |
| TCONS_00010939 | lncRNA | downstream | 165441 | 25380168 ~ 25408520 (+) | False | XLOC_004733 |
| TCONS_00010741 | lncRNA | downstream | 167550 | 25382277 ~ 25389591 (+) | True | XLOC_004733 |
| TCONS_00009370 | mRNA | upstream | 94557 | 25097754 ~ 25110974 (+) | True | XLOC_004730 |
| TCONS_00009369 | mRNA | upstream | 112961 | 25085751 ~ 25092570 (+) | True | XLOC_004729 |
| TCONS_00009367 | mRNA | upstream | 246739 | 24952902 ~ 24958792 (+) | False | XLOC_004727 |
| TCONS_00009366 | mRNA | upstream | 246739 | 24952902 ~ 24958792 (+) | True | XLOC_004727 |
| TCONS_00009365 | mRNA | upstream | 435341 | 24738962 ~ 24770190 (+) | True | XLOC_004725 |
| TCONS_00009373 | mRNA | downstream | 9116 | 25223843 ~ 25267129 (+) | False | XLOC_004732 |
| TCONS_00009374 | mRNA | downstream | 9146 | 25223873 ~ 25267131 (+) | False | XLOC_004732 |
| TCONS_00009375 | mRNA | downstream | 9146 | 25223873 ~ 25284510 (+) | True | XLOC_004732 |
| TCONS_00009378 | mRNA | downstream | 217900 | 25432627 ~ 25485309 (+) | False | XLOC_004734 |
| TCONS_00009379 | mRNA | downstream | 252833 | 25467560 ~ 25487244 (+) | False | XLOC_004734 |
| TCONS_00009364 | other | upstream | 639939 | 24565478 ~ 24565592 (+) | True | XLOC_004724 |
| TCONS_00009361 | other | upstream | 787191 | 24418224 ~ 24418340 (+) | True | XLOC_004723 |
| TCONS_00009355 | other | upstream | 860038 | 24342331 ~ 24345493 (+) | False | XLOC_004722 |
| TCONS_00009353 | other | upstream | 991014 | 24214401 ~ 24214517 (+) | True | XLOC_004721 |
| TCONS_00009349 | other | upstream | 1273516 | 23923325 ~ 23932015 (+) | True | XLOC_004717 |
| TCONS_00009372 | other | downstream | 9072 | 25223799 ~ 25251787 (+) | False | XLOC_004732 |
| TCONS_00009380 | other | downstream | 253585 | 25468312 ~ 25477906 (+) | True | XLOC_004734 |
| TCONS_00009383 | other | downstream | 433400 | 25648127 ~ 25648243 (+) | True | XLOC_004738 |
| TCONS_00009419 | other | downstream | 1920142 | 27134869 ~ 27134967 (+) | True | XLOC_004762 |
| TCONS_00009421 | other | downstream | 1942216 | 27156943 ~ 27163064 (+) | False | XLOC_004764 |
