RNA id: AMCG00017549


Basic Information

Item Value
RNA id AMCG00017549
length 381
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00017549
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9229000 ~ 9231753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGAATCGGCGTTGTTGGACCTGCTGGAGTGTCCAGTGTGCCTGGAGCGGCTCGACGCCTCTGCCAAGGTCCTGCCCTGCCAGCACACCTTCTGCAAGCGCTGTCTGCAGGGCATCCTGAACTCTAGGAGCGAGCTGCGCTGCCCTGAATGCAGGACCCTAGTGGACTGCAGCGTGGACGAGCTGCCCAGCAACATCCTGCTGGTCCGGCTGCTCGACGGCATAAAGCAAAGGCCCAGGCGGCCAGGAGCCAGCGGTTGTGCCAATGGCACCAGCGGCACCAGCAGTGTGGCACGGGCACAAAGCAGTGGTATACAGGGAACCCCAAGTGGACAGCTGCAACGGATCCAAGCAAAGAGCCCACCAGTCAGGTTGTGA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 493768 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 623374 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 847330 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 941883 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 999439 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 363177 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 400892 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 430811 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 443793 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 445718 9677471 ~ 9680221 (-) True G91301
AMCG00017547 mRNA downstream 44254 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017546 mRNA downstream 72733 9150844 ~ 9156267 (-) True AMCG00017546
AMCG00017542 mRNA downstream 194995 9021133 ~ 9034005 (-) True AMCG00017542
AMCG00017541 mRNA downstream 215828 8977238 ~ 9013172 (-) True AMCG00017541
AMCG00017540 mRNA downstream 252335 8973615 ~ 8976665 (-) True AMCG00017540
AMCG00017548 mRNA upstream 13463 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017550 mRNA upstream 110361 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017554 mRNA upstream 263975 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017556 mRNA upstream 1130218 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 1255544 10487297 ~ 10496150 (-) True AMCG00017555
TU113686 other downstream 473093 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 714045 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1232405 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1396408 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 2115819 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 1129547 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5201405 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6635194 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6798649 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6798703 16030456 ~ 16030905 (-) False G92129

Expression Profile