RNA id: AMCG00017551


Basic Information

Item Value
RNA id AMCG00017551
length 1533
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00017551
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9257206 ~ 9372195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGAGCCACTGCCCTTCGCTTTAACAACACCAGGCGGAGGATCGACAGCATCAGGATTGCGGGCAACTTCTTCCAGTATCTCAGTTTCCAGGTCCTCTGGTTCTGTACAAAACCCGACAAGAGACAGGTCTTCAGTGACAAAAGCACAAGGATATCGCAGCACGACAAATTGTTCCTTCAACACGGCAGCTCGAGTCTTTGCTTGGGCCTGCAGTTCAGTCATCAGGATCAGGGAGACGAGCTGCAGCAGCCCCGTTGGGCAGTACTGGTCCCGCAGCTGCTGGCACGCCCCTTTTACACAAGGACAATGGCACACCTTTCACACAGAGCCATTCTCACAATGTGCATGGAGAGCAGGCTGAGATGGCTGAGGCCGAGGTTACCTGAGCAGAACGTGTCCCCCGGCCTTCACAGCgtccttctgctgctgctgcttctgcacTTGGTCCAGGGCAGCGTGACACTGTTCATGCCTTACCTTTCGCTCTGGACTGCCTCCACCCCCACTGGAGCTGAGCACGTGCCTCCAGCCCTGCTCTCGAGCTCGGTTGATGCGATTCAGCTGGCGAGAGAACTGAAGATGACTGCAGGCAACACCACACACACGGACCGAAGCCCCGAGTACGTTGGCTTTGCCCTGGTGCCCATCTGCTTCCTACTAGGTCTCATTGGAGTCTTAATCTGTCATGTTTTAAAGCGCAAGGGATACCGCTGCACGACAGAATCTGAAGAAGTGATTGAAGATGTGAAAGATCCTGAGGAAATGAAAGagatgAATGATACCTTCAGCGAATGTAATGCTGACACGATGCTGATGCCCTGTTTCGACAGCCCAACCACTCCAATCACGCCTTTCACGCCAGCATCCCCCCTCACACCTGTGGCAGTCGCCAGCCCTGCCAAGCACACCTGCCAAGGTAACCATCTGCACACCGTTGGTGGGGTGGCCGAGAAGAGCGTATGCTCGCGGTGCACCAACAAGAGATGGACCCCAATGCGCCAGGCCGGCAAGGTGAAAGAACACAGGAAGAGTAATGCCACAGAAGTCACCGTCCTCTCTGTGGGGAGGTTCAGGGTGACAAAAAGTGAAACCAGGAACCGGAAAGACAGGAAATCTGTTCAGTCCGATTCAGAGGACGGGAGAACCAATGCAAATGGGGCCGCCTCTCCTTCTCCGACATCAGAGCAACCAAAGAGCAGATCAACGTCGTTGTCACAGGTTCTCCTGGCACTCTTACCGTCCGGGTTGGCGCTGATGAAGATGCGCACAGTCCTGCCGGTCGGGACGTGGTGCGGAGAGATGCCCAGCACATTCCCGCTGAGGGCCGCCCTGCGGAGCGCGGAGTCCCGGGGACAGGACGCCCTGCTACCGGCTCCCGTCGGCCACATGAGCGGCGGCTTCCAGCGCAGCGCTGAACATACAGAAACGGGTCTGATCAACCCAGCCGCGTCCCCTGACAGCGTCAGCGGCAACAGCGAGCCATGTGTGCGCGACTGGCCAGCGGGCTGCTCTAGTCACTGCAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113726 lncRNA upstream 416168 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 432369 8819713 ~ 8824837 (+) True G91135
TU113695 lncRNA upstream 473117 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 524574 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 970478 8286292 ~ 8286728 (+) True G91004
TU113913 lncRNA downstream 794335 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 925207 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 1195983 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1367908 10740103 ~ 10764336 (+) False G91334
TU113941 lncRNA downstream 1391645 10763840 ~ 10764336 (+) True G91334
AMCG00017545 mRNA upstream 109867 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017544 mRNA upstream 154003 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017543 mRNA upstream 236164 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017538 mRNA upstream 287728 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017534 mRNA upstream 448212 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017553 mRNA downstream 258206 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017552 mRNA downstream 521033 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017560 mRNA downstream 2017994 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017561 mRNA downstream 2135681 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017562 mRNA downstream 2494970 11867165 ~ 11879473 (+) True AMCG00017562
TU113671 other upstream 503425 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 567800 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 1124352 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1563859 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1585356 7668183 ~ 7671850 (+) True G90877
TU113887 other downstream 147578 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 2507419 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 4664681 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 5705130 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 5740415 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile