RNA id: AMCG00017553


Basic Information

Item Value
RNA id AMCG00017553
length 1608
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00017553
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9630401 ~ 9668976 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGACATCACTGAAGTTGTGAGTCTAGCTGTGCATAAGACTGAAAGCATGATTGAAACTGGGGCTGTCTTCACCTTCGAGATGTATCTGCTGTCAGAACGTGTCTTCCTGTTTGGAGCTGAAACACTGGAATCTCACAGAGAATGGACTCAGGCAATAACCAAGTGTTCCATCCCAACCGCGGTTCAAGACGTCACAAGAAAAGATTTTGAATTGATTGGACAGCTGTATTACAAGGAAGGTTATGATCTTTCCCACTGGAGAGTTGGGTGGTTTGCACTTGAGAAATCCTGCCTGCACTTTTATTCTGAAGCAGAAGATGAAGATGACGAAGTTCTGCAGTTGAAAAGGCTTCAGGAGCTCAcTGTAACCACACATACAGAAGGTGATGAAAGGGTGGATGTGCTATTGATGGTTGAAAATGGAAGAACACTGTATGTGCATGGCTTTACCAAACTGGATTTTGTGGTCTGGCATGCTGCAATCAAAAAGGCAGCTGGTACAGATGGCAATGCTTTGCCAGACCAGCAGCTCAGCAAAAATGGCATTCCCATCATTGTGGATAGCTGCATAGCATTTGTCACTCAGCATGgTCTGTGCTATGAAGGTATTTACCAGAAGAAAGGGAACCCGGAACATGTGACTCAGCTTTTGGACAGCTTTTGGAAAGATGccagaaatgtgaaattaagaATTGGTGAACATCAGCTGGAAGATGTGACAGATGTGTTCAAAACCTTCTTATCTAAAACTGAAGATGCCATACTCACTAAAGAATTATATCCATATTGGATATCTGTTTTAGATCATGAGAATGAGAAGCTCAGAGTGGAGAAGTATTCCACCTTCATTCGAACTTTGCCCAGAGTCAACAGAACAACACTGGCTGCTTTAATGCAACACTTATATAGGATCCAGAAATGCTCTGATATAAATCAAATGAACGCACATAATTTAGCTCTAGAGTTTTCATCCTGTCTGTTCCAAACTGAGGGTCAGACCAGTCAAGAAGTCGCTGTCATTGAAGACCTTATCAACAATTATGTAGAATTGTTTGATGTTAATGAAGCCCAAGTGAAGCAAATGGAAATAGAGAACCGTTTTATAACCAAATGGAAAGACACAATGTTTTCCCAGGCCGGGGATCTAATCTTTGAGGTTTACTTGGAGAAGAAAGAGCCTGAAACCTGCTGCTTAATCAAGGTTTCTCCATCAATGACGGCAGATGAGCTGGCtgataatgtattaaacatgaaGAATATTGTCCCAGACAAGAATGACATTTGGATCACATTTgaagttattgaaaatggagaACTTGAGCGGCCATTACACTACAAAGAAAAGGTCCTCGAGCAAGTTCTGGAGTGGAGCTCTTTAGAGGAACCTGGTTCTGCCTACTTGAGCACTAAACCCGATAAGGAAATCTCATTGAAGTTCATTAAGTGTTACCTAGGCCTGAAGAAAAAGTTGAAGCCACCGACAAGGTATCTATGCTGTGACGAGCAGGAGGCACAGATCGAATGGGTGACTGACATTCTCAGAGTCAAGGCAGCATACATTCCATCATCGTTGCCTTTGCTCACATGGGCAACTAATGCTAATTAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113726 lncRNA upstream 789363 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 805564 8819713 ~ 8824837 (+) True G91135
TU113695 lncRNA upstream 846312 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 897769 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 1343673 8286292 ~ 8286728 (+) True G91004
TU113913 lncRNA downstream 497554 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 628426 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 899202 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1071127 10740103 ~ 10764336 (+) False G91334
TU113941 lncRNA downstream 1094864 10763840 ~ 10764336 (+) True G91334
AMCG00017551 mRNA upstream 258206 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017545 mRNA upstream 483062 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017544 mRNA upstream 527198 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017543 mRNA upstream 609359 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017538 mRNA upstream 660923 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017552 mRNA downstream 224252 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017560 mRNA downstream 1721213 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017561 mRNA downstream 1838900 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017562 mRNA downstream 2198189 11867165 ~ 11879473 (+) True AMCG00017562
AMCG00017577 mRNA downstream 2355280 12024256 ~ 12024505 (+) True AMCG00017577
TU113887 other upstream 47121 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 876620 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 940995 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 1497547 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1937054 7692585 ~ 7693347 (+) True G90881
TU114078 other downstream 2210638 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 4367900 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 5408349 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 5443634 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 6198055 15867031 ~ 15867634 (+) True G92123

Expression Profile