RNA id: AMCG00017554


Basic Information

Item Value
RNA id AMCG00017554
length 2223
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00017554
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9495728 ~ 9547314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTAATGTGCATGGCTCAGAAGCAGATCGACAAGACCAAGAACAGCattcacacaaatatatttcctCTGAGAAGGAACAACTACAGCAATTGGAGAGAGCTTGTGCTAAAGGAGCAACTGAGAGTGATAATGGTCACACTGGAGCTGAAAGGAGACATGGCAAAGACACAGGAGGAATGTCACCTAAAGATTGGCCTGCTAGCTGGCTGGCATCCAGTTCAACTGCTCCACAAAGCGGTGGCTCTGGAAATGCAGCCCCCCTGGTTGCTGTGGAGCTCCTCCAGGAAGCTGAAGCAGGAAAACATGCCCTCCTGGAGCACATTGAAAACCATGGTTCACTTCATGAAATTGCTTCCTGTAGAATCAGAAGACCCAAATGATCTTCAGCATTCTTGCTATATTACTGCACCCTGCAATATGATCCAACAAATGACCTGCAGGATTGTGAATGACATGAGTCCACTAATTATAACAGACTCAGAAGAACTGGTTAGCAATATAATCAGAATACAGTGTACAGACACCAGGATAAAAATACCATTCCCAATCACGATTGCGATACCATTCAGTGCCCGCTATCGAGGAAATTACCGTGATATCATGGTGAAGGTGATTGATGATGAGTTACAGCCAAGCTACATACATCCTTTTTCCACTGAAGGCACCTATGGAGGACAGAAGGGTTCATTTGCAGAAGTAAAGGTGTACAAGCTTGGCATATTTTCAGTTGTGTCATGCTTACATAAGGAAAATTTCACTGTTCCCAGAAAAGGACTTTCTCTGAAACTGAGCATGGATGCCAGAATTTCCCTTGATTACCCGCCAGGGTCTTTTAGTGCTCCTGTGATTGTTCAGTCTATGGTCCAGCCTATTGATGCATCACTCATAGCAACACTGAAATCTAAGAATGATTCATACCACTTTGTTGTTTCTACAAGCCCTCTAGTTCATATTGTTCATCCCTCAACACAGTCCTTCCGGAAACCCGTCACTGTCACTCTTCCTTGCCCCCCAAACCCAAACAAGAAGAAGCAAGGAGAGGAAGTAGAACACACAAGACCAACCAGTGCATCAGTAATCAGAAACACTTCCATTCATCGTACAACTATATATGACTTGTGTGTCCTCCTGAACAATTTCAGGGCAATGAGCGCCTCTGTGAAGAATTCAAGAAAGACAGCTAATGAATACCTCTCCTTACTTGGTTATAAATCCAAAGAAGACCAATGGCTTGTCATGGAAGATGTGGCAGTAAGGAATATGCAGAATGGACTAGTCTCTTTCGAAATgactgaacattttgaaaaatttgttgttttacGACTCGTGTCCTCAATGAAACATTCACATTTGACAGCTTTAATTCATGACATCGAAGAGTCTATCTGCAGTACTATGGTTACCATTGTCTTGTATCGAAAAAAAGAACACCCAAACAATGCTGTGGTTATAACAGTTCCCACCAAAGACCTGAGCTGGGAGCTGATGAAGCTTCGTGGAGAAGGATACTGTAGTCCTCCAGACCCATCGGAGGAAATCAAAATGCGAGAAGGAGaacaatttgttttaacatttagtGGAAATATCACATCAGCAGGGGGAAAAAGCAATGGTCCCACACTGCAGAGAATAACATTCCATTCCCAGCGAAAGAACAGGCTGGATCTGTGTTTAAAGGAGGTGGATGAGTTTGGCAATTACTGCTCACCGCATTACAAAGGGAcagcaatattttataaagtCACAAAGGAACAGATTGCTGTGTGTGGGGATATTGAATGTAATCTTCAAGACCCCGTGTGCAAACTCCCATTAACCTTGCCCAAGGTGAGCCAGACAGATGAtttgaatgcttttaaatatttgcctTCTGCCTGTTTTTGCAAGCCCCTCTCAGATGCCCTCCTACTCTGGCTGTCAGAGGAGCTGTCAGAAGAGGACGCAGCTCTCCTGGTGCTCTGCCTCCGAATCCGCCGCAGCTCCATCCAGCTGGTCAAACTCAAAATCCCAGAGAACCTGCCCCAACAGATATTTGAGCTTCTTGTCATGTGGAGGAAGAGTCTTCCCGCCAGTGCTGACAAAATCAGTCTACTCTCACACTATCTCTCTAAGTGTGGTAGAAGCGATCTGGCAAAAGATTTGATTCTACAAGAAAGAATCCACAAATCCGCTGCTCCGCTACTGAAGGTGTTGCCTAAAGTGAGGCTCAAGTCATAG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 760496 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 890102 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 1114058 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 1208611 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 1266167 8229315 ~ 8229561 (-) True G90992
TU113900 lncRNA upstream 47616 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 85331 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 115250 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 128232 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 130157 9677471 ~ 9680221 (-) True G91301
AMCG00017550 mRNA downstream 123649 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 210225 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 263975 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 310982 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017546 mRNA downstream 339461 9150844 ~ 9156267 (-) True AMCG00017546
AMCG00017556 mRNA upstream 814657 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 939983 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017559 mRNA upstream 1400432 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 1400796 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 1746294 11293608 ~ 11315800 (-) True AMCG00017557
TU113686 other downstream 739821 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 980773 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1499133 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1663136 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 2382547 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 813986 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 4885844 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6319633 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6483088 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6483142 16030456 ~ 16030905 (-) False G92129

Expression Profile