RNA id: AMCG00017557


Basic Information

Item Value
RNA id AMCG00017557
length 1980
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00017557
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11293608 ~ 11315800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGCTTTACTGTGACGCCACCATGTCTCAATGAAGCGGACCGATTCAGTCTGGATGCCCTGCGCCAAATTCATAAAGAGCTTGATGATGACAATGACGGGGGAATTGAAGTAAATGAAAGTGTCGAGttcaTAATTGAAGACATGAAGCAgcaacaaactaacaaacacagTAATCTGCACAGAGAAGACCAGCACATCACGATTGAGGAATTGTGGAAATGTTGGAAAACTTCAGAAGTGCACAACTGGACAGTGGATGAAACTGTGCAGTGGTTGATTGAAATTGTTGAACTGCCTCAGTATGAGAATAATTTTAGGGACTATAACGTAAACGGTAACACCCTACCTCGAATAGCTGCTAATGAACCTTCGTTCATGACATCGCAATTAAAAATCTTGGATCAGAGGCACAAGCAGAAGCTTAACCTAAAGTCTCTAGATGTGGTTCTGTTTGGACCCCCATTACGTCCGCCACACAACTGGAtgaaagattttgttttgctgatttCAATAATCATTGGCGTTGGTGGTTGCTGGTTTGCATACGTTCAGAATAAAACCTCTAAGGAGCACATTTCAAAGATGATGAAAGATTTAGAAAGCCTTCAAAGTGCAGAGCAGAGTCTTCAGGAACTTCAAGAACGGCTTGAGAAAGCCCAGGAGGAAAACCGAACAGTTGCTGTGGAGAAACAGAATTTAGAGCGGAAAATGAGGGATGAAATTATAGATGCCAAAAAGGAGGCCCAACGCCTGCGAGAGCTGAGGGAGGGGGCGGAGTGTGAGCTGAGCCGACTCAAATACGCGGAAGAGGAACTGGTTCAGGTACGCATGGCACTAaggaaagcagagagagaatTTGAAATCCAAGGAGACTGGACAGTCGCAGAGACTCTGCAAAAGTGGCTGCAGTTAACACACGAGGTGGAAGTGCAGTATTACAACATCAAGAAACAGAGTGCCGAGATGCAGTTAACTGTTGCCAAGGAGGAGgcagaaaaaataaaaaagaagagaagTTCAGTCTTTGGGACACTGCATGTAGCCCACAGTTCCTCCCTGGATGAGGTGGACCACAAGATACTAGAGGCAAAAAAAGCTCTGTCTGAGGTAACAGCCTGTCTGCGGGAGCGTCTCCACCGATGGCAGCAGATTGAGAAGCTCTGCGGCTTTCCGGTGGTGCACAATTCAGGGCTGCCCAACCTGACAGCTACCCTCTACTCCGATCACAGCTGGGTGGTCATGCCCAGGGTCTCGGTGCCTCCCTACCCCATTGCTGGTGGAGTGGATGACCTAGACGAAGACACCCCTCCAATCATTCCACAGTTTCCCACGCCACTAATGAAGGCTGGTTCTTTAGCCAGAAGCAGTAGCCTGTGTCGCTCTCGGCGTAGCATGATGAGCTCAGCTCCCCAGCCCATAATGCTCTCCCCAGACCCAGACCTGCTGTCGATGGCCAGCAGTCCTCTCACGTATCACgctgaagaggaggaggacccCATCTACTTCAgcacagaaagaaaactGGAATCTCAGGACACATGCTCTGACTGCGATTCTTTAAATTCCTCCATGGGAAGAAAGCAGTTTGGCAGCACGGAAGTTCAGGAAACTCCCTCTAGGAAAATCTCCAGGGACGAGTTATTCGATAAGGAACTGTGTGCAGCAGATTCACCAACCTCCTTTGATCAGCACAAAGGTTCTCCTGACTCGATGGGTGTTACAGAATCCCAAAGCATGGTCTTTAACCCTGTCAGCAAGATGGTTTACAATGGCATCTTAGAGAAGTCTTACAGTATGGGCCAGCTGCCCAGCCAGCTGCCTGTCTCAGAAAACCGTTATCCTTCTCTTACTTCATTAGATATTGAGGGCAGAGTGGCAAAGGAACAGAAGATGCACAGCATGGCCCAAGACTCCTGTGAGAACGGTGACAAGGTGAAGAAGTCATCCAAgttaaaaagtttatttaagaagaaaaag

Function

GO: NA

KEGG:

id description
K18196 STIM2; stromal interaction molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113985 lncRNA downstream 2374 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 5445 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 25013 11268106 ~ 11268595 (-) True G91359
TU113963 lncRNA downstream 141910 11151378 ~ 11151698 (-) True G91355
TU113962 lncRNA downstream 225593 11067713 ~ 11068015 (-) True G91354
TU113996 lncRNA upstream 81720 11397520 ~ 11397731 (-) True G91381
TU114018 lncRNA upstream 188494 11504294 ~ 11506805 (-) False AMCG00017563
TU114095 lncRNA upstream 512208 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 515633 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 561560 11877360 ~ 11879337 (-) False AMCG00017569
AMCG00017558 mRNA downstream 343899 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 345603 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 797458 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017556 mRNA downstream 931341 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017554 mRNA downstream 1746294 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017572 mRNA upstream 41005 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017566 mRNA upstream 98528 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017563 mRNA upstream 188224 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 215310 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017570 mRNA upstream 426684 11742484 ~ 11770097 (-) True AMCG00017570
TU113928 other downstream 796504 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2537701 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2778653 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3297013 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3461016 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3117358 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4551147 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4714602 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4714656 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6152805 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile