RNA id: AMCG00017558


Basic Information

Item Value
RNA id AMCG00017558
length 453
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017558
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10948110 ~ 10949709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGGTTATTTGGCAGCAAAGGGAATTCGAGCTGCTGGAAGTCGTGTTGGACAAGCCCTCCGGACAATAGATCAGCCATACCATGAAATGCGATGCAATGGTGAGCGGAATCTTAATCCTATACCCTACCGTGTTGCTTATACAGGACACAAACTCCATTTAGATCAAAATGAAAAGCTGGGCATGTTTGGAGTTACACATGTCCTAGCAATTGATGGCTATAGCAGCAAGATCATGACTTATGCCTGTATGCCAATAAAGAATAACCTCACTATTTATGAAAAAAATCACACAATTGAGAGGATGTGGTCTGAAATTAATAACAGGGTTAATTATCCTTTGAAGGAGACTCTTGTCCAGTTGGTCGACCAAGAAGTCATTGATATGGACTGCAACTTAACAAGATACTGTGTGTCTAAACTGTCTGTCAACTGTGTCATCTGGGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113927 lncRNA downstream 586962 10357400 ~ 10361148 (-) True G91321
TU113917 lncRNA downstream 650302 10297405 ~ 10297808 (-) True G91311
TU113907 lncRNA downstream 1267889 9677471 ~ 9680221 (-) True G91301
TU113906 lncRNA downstream 1272331 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 1285322 9662564 ~ 9662788 (-) True G91298
TU113962 lncRNA upstream 118004 11067713 ~ 11068015 (-) True G91354
TU113963 lncRNA upstream 201669 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 318397 11268106 ~ 11268595 (-) True G91359
TU113970 lncRNA upstream 338146 11287855 ~ 11288163 (-) True G91362
TU113985 lncRNA upstream 340619 11290328 ~ 11291234 (-) True G91371
AMCG00017559 mRNA downstream 105 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 451960 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017556 mRNA downstream 585843 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017554 mRNA downstream 1400796 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 1576031 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017557 mRNA upstream 343899 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017572 mRNA upstream 407096 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017566 mRNA upstream 464619 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017563 mRNA upstream 554315 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 581401 11531110 ~ 11536385 (-) True AMCG00017571
TU113928 other downstream 451006 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2192203 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2433155 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 2951515 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3115518 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3483449 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4917238 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 5080693 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 5080747 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6518896 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile