RNA id: AMCG00017561


Basic Information

Item Value
RNA id AMCG00017561
length 3063
RNA type mRNA
GC content 0.42
exon number 22
gene id AMCG00017561
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11507876 ~ 11525014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTTCAACCTCCATTTCTGCGTCATCTACGTACTGTGCAGTGTTTGTCTTTTAGCACTGGTTCAATTGCCAGTTGTTTGCCAGGACTCATCACACACCTCATCAGTTGCTCCACATCCTGGTGAAAGCCCAGGGAATGGTGATTTTATTGAGTTTGATTATGATCCAGATGTTGTCATCGATAACTACAGCCTCTTGGTTCGATATTTGTGCTCAAGGCCTTGCGCTGttcttgttgatgttgttgctTCTTCAGAGTTAAGAACTGGAGTCGTTATCTACAAGAGAAGATGGAGAAATGAGAAACTCCTTAATACCAGGAGAAGTCGAACAGTTTTACTGAAGTTTCCAAGCATTATAGCTTATAGGGAGGACTTTTTCATTAGACACTCAATTGACATTCATGGTGTGATGCTGAGGGCCTGGATTGTTCACATACAGGGGTACAATGAAAGCAGTGGGATTGCACAGTCCTATCATCAGGCTGTGGCAAAGGCCTTTCAGGTTTTGAACGCTATCTTGCCCATTCAGCGTCCTTTAAAAAACCACAGGAAGTGTCTTCGGTGGGATGTGGAACAAACGTGGCAGTTTACTAAAAATAAGATCCCCCAGTGCCCTCGTGAATCTGTACCGGAGAGAGATTTGGAGTTATCCGAAAGTTTGATTGCTTCATCAACAAAAACTTTGAAAGTACCAGAATTCAAAGAGTTTGTGATCCCAGtttggatTTATCTACTTAATTGGTGTACAAGTAGAATCTGTGCAATTGTTCACCACGTGGATAACAACAATTTGTTCAAAACACCTTTGCTATTGCTAACAGACAAAGGGGAAATCGTCATTCAGGTCCATCTTGAATCAGGGCAAGACAGCGCTTTCAAATCATTCACAGGACTCTCCCTGAGGATGTGGTACCGTTTAGATATGTCTCTGGATGGAAGAAAGGTGATGCTGAGTGTAATTTCTTGGAAGACAATGAAAGAAACGgtagaaaataaacattcataCGTATTTGGTGAAAATATACTCTACAATGACACCTCTGGATACTTTGTAATCGGAGGCGGCAGATATTTTCAGAGCATACAGGGCTTTTTTGGACCAGTGAAGTACTACCGCCTGAAAGCAAAGCTGGAGAATTCGGTTGTCAACCCGCTTTTCCCTCCGAGTATTTTACAGGAACTAGATCACAAATATCAGAATTGTGAAAGCATTAAAGAAATTATCCCAGTTTTTCTGAAGATATATGAAAGTAACAGATTTGTTACAGATAAAAgTACCTGTGAATCCTATATTTcctatttaaataacaaatttgGCAGGCGTCCTGTTTGTGATCAGCCGTGGAGCTGggaaatgcaaataaagcaCCTAACTCTTTTCAGCCTTCTTCAGACAATGGAGCTTGACCTAttttttggTTCCTCGGATATGGATGTCACATTGCAATTTGGGAGGCAGGTTTTTGAAATGGTTTCTGAGAGCCTAAGCAGTCATGGAGGTCTAGGATTTGTACGCTCTATGATCCCATACTTACAGATCTCCAGCTGCTGCGGCTATCACAGGGCATCATACTTCTTGGCTGTCATTCACGAGGCAGGCTTAGGGGTGCCAGTGGACTCACTCCAGGGATATGTCTATAGTTTAATTGGTGCACAGGGAGATGAACGACTGTCTCTTCTGCATCTTGGTTACGTGCACATGCAAGGCATTGATGGGTATCCTCGGGATTACGATCTCTCGTACAGTTACTATGTTAATCTTGCCAAACAGACTTGTGTGGATCGGTGGAAAGTAGAAGAAACAGAACAATGCACCACTGAACACATTCACCTGACTGATGAATTAGCACTAAAATCTCAGACCAATGAGAAAcatgatatatattattatctaAACTATCAAGCACAACGAGGAGATGTGGAAGCCCAGagAACCTTAGCAAGAATGTTGTTTTGGGGACAACAAGGAGTGTCAAAAAATATTGAAGCTGCGGCAAAGTGGTATGCCCAAAGTGCTCTTCAGATGAAAGATGCTCAGGCAATGTATGACTTctctattgtattatttaagGGATTGGTTAAAGCCATCAATGGGTTGGGATGGTATTATAGCACCTATAAAGCAGATATGAAGACAGCAGTGAAGTACTTTGAAAAAGCTGCACAAAATGGAAGCAGAGATGCAATATATAATTTGGGAATATTACATCTAAATGGACAGTACCCAGGAAAGCCAACAAAGAATGAGTCAGCAGCTTTCCAGCACTTCTATAAAGCTTCTCTCCTTGGACACGTTGATGCCATTGTTGAAACATCTCAGTACTACTGTACAGGGAACCTAGACAACTTCACACGAAATCCAGAAACAGCTGTCCTGGAAGAAGCCCTTCTGAATTACCTTTTAGCTGCTGAGGCTGGGATTGAAGTAGCACAGACCAATGTCGCTCACATGTGTGAGGAGAACCCTgacTTGGGGCGGCATCATTTCTCCACTTATGATTGTGAATGGAGATACTATAATCATTCCACTTTTAATTACTTAGGTTCCTCATATGGGTTTCTGAAAATGGGAGACTATTATTACTATGGACACAATAATCAGTCACAAGACATTGAGATGTCCATTTTAATGTATGCAAACGCTGCTCTAACTGACAGCTCTCAGggAATTTTCAACTTAGCAGCCATAATTGAAGAGGGTCATGAAATTCCTGAAATAATTTTTAACAAATTAGGAATTAATAAAGCTGACCAGCTGGAAAGAACTGCTGTCTTAGAGAATCTTTATAGAAGCTTTGTTCAGTGTCCAGGTGAAAGTGGCTtggaaaaaaattatgaatCATCCGGTGCAGGCATCCTTGGTGACACTATTCAGGAGCAGGGGGATATCACCAGAAATGTTCAGGAGAATGAGAACACAGATGAGGAGCTGCACGTTTCTTCTACTGACACTCCAGCTGAGAACCATAGGAACTCTGGGCTGGATTTAATCAGGTGTAGAATCAATCAGTTGACTGAAGCCGTACCCAACCTGCTGTACAGCCAACATTCAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114003 lncRNA upstream 91136 11416521 ~ 11416740 (+) True G91387
TU114001 lncRNA upstream 92774 11408688 ~ 11415102 (+) True G91386
TU114002 lncRNA upstream 95456 11408294 ~ 11412420 (+) False G91386
TU113973 lncRNA upstream 216300 11290288 ~ 11291576 (+) True G91363
TU113969 lncRNA upstream 219713 11287861 ~ 11288163 (+) True G91361
TU114112 lncRNA downstream 410613 11935627 ~ 11935961 (+) True G91480
TU114113 lncRNA downstream 411087 11936101 ~ 11936339 (+) True G91481
TU114123 lncRNA downstream 450395 11975409 ~ 11975612 (+) True G91490
TU114194 lncRNA downstream 910730 12435744 ~ 12435984 (+) True G91545
TU114199 lncRNA downstream 965069 12490083 ~ 12490296 (+) True G91549
AMCG00017560 mRNA upstream 105205 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017552 mRNA upstream 1612443 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017553 mRNA upstream 1838900 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017551 mRNA upstream 2135681 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017545 mRNA upstream 2360537 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017562 mRNA downstream 342151 11867165 ~ 11879473 (+) True AMCG00017562
AMCG00017577 mRNA downstream 499242 12024256 ~ 12024505 (+) True AMCG00017577
AMCG00017578 mRNA downstream 499519 12024533 ~ 12029958 (+) True AMCG00017578
AMCG00017575 mRNA downstream 573976 12098990 ~ 12118066 (+) True AMCG00017575
AMCG00017576 mRNA downstream 604649 12129663 ~ 12130950 (+) True AMCG00017576
TU113887 other upstream 1924596 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 2754095 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 2818470 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 3375022 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 3814529 7692585 ~ 7693347 (+) True G90881
TU114078 other downstream 354600 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 2511862 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 3552311 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 3587596 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 4342017 15867031 ~ 15867634 (+) True G92123

Expression Profile