RNA id: AMCG00017562


Basic Information

Item Value
RNA id AMCG00017562
length 3832
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00017562
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11867165 ~ 11879473 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGACAAGCGCTATGGCACGTAGGCTCTAGTGTACCCTCATCATGTGACAGGGAAATGAGTATGGCTCCCTCGTAGATGGCATCACCTGTCTGAAGTCTGCACATCTCTCGGCTGCTAGTAGCGCAGTTCTTGCTGTTTCCATGGAGTAAAAATGGCTCCTTTTCCTGAAGAGGTGGATGTTTTCACAGGCCCACACTGGCGGATGAAACAGTTAGTGGGTCTTTATTGTGACAAGctgTCCAAGACCAACTTCTCCAACAACAACGACTTCCGCTCGTTTCTCCAGTCGCTCTGTGCCACCTTCaaagaatttaaaatgcatgaacaaATTGAAAACGAATACATCATTGGATTGCTGCAGCAACGTAGCCAGACTGTGTATAATGTCCATTCTGACAACAAGCTCTCCGAGATGCTCAGTCTCTTCGAAAAGGGACTCAAAAATGTTAAGaatgAATACGAACAGTTGAACTACGCACAGCAGCTGAAGGAGAAGCTTGAGGCTTTTACACAGGATTTTCTTCCTCATatgaaagaggaagaggagGTGTTCCAGCCAATGCTGATGGAGTACTTCACCTATGACGAGCTGAAGGACATCAAGAAGAAGGTGATCGCACAGCACTGTACACAGAGACGCTGTGACACCGTGGAGTTTTTGAAGGGACTCAGTCTCTGGAACCAGGCAGAGGAACTCCACAAAGCCTTCAAATACTCAGTGTTCAGATACCTCAGTCCAGAGGATCTGTGTCATTGTAGCCTGGTCTGCTCTGCCTGGTCAGAAGTGGCAAAGACTGGATCCCTTTGGAAACATCTGTATCCAGTGCGCTGGGCGAGAGGTGATAATTACAAAGGACCTCCTGGAGATCTGGATCAGGAACCAGACGATGAGTGGGTCAAGAGCCGAGAAGATGAGGGCAAGGCTTACCAGGAATGGGATGAAGATGCAGATATTGATGAAACTGAGGAGGGTTTTAAAGACTCTCCAGCCATTACTGtagtgcagagagagaagagtCTGTTGTATGGAATGATTCAGCATCTGCTCCCAGTGGTTGGATCCTCCGTGAAATCTGTGGTTTTGGCTTATAGTTCAGCTGTCTCCAGCAAAATGGTACGACAAATATTGAGTCTTTGTCCAAACCTAATGCACTTAGATCTCACCCAAACTGATATCACAGATTCTGCTTTCGACAGCTGGTCATCTCTTGGGAGCTGCAAGACACTTGAACACCTAGACTTGTCTGGCTGTGACAAGATTACAGATATGATGCTGAAAAAACTCTCTCAGGGTCTTGGAGATCTCACCACACCCGatgaaaatgaaggaaaaggGGGACTTTCCAAAAAGTGTCGAAAGATTTTAAAGGGGCAACAGCCGATCAGCCTGCAGCCAAGTCTTGAATGTGGCCTCCCAGTCCGCAGTCATCAAGCTCTGATCTTCAAGAGGAAACCGGGAGGGCAGGCGACGGTCCCATCTCAGGTGTGGGTGTTGGATCCTGTCAATTTGGTCGATATTGAAGACGCAGCCGAGTGGAAGCAAAAAAGCAATGAAGGACTTGGTTTTGGAATGAAGGACTTGGAATCTCCGCCATCTAACAACTCTTGCTGCTGCAGAAGAAGCAAGTTTGGCTTCAGGACTAGTGCCTATTGGCAGCAGTATGCCACCTCCGCTGCGGAAGTGAGGTGTGGCCACTCGTTCTGTTGCAACGAGAAAGCTTTGCGGACTATTGGGCCACTGCCAGAGCCCCCTGCACTGTGCAATGCAGTGTTACGGACTAGGCCATCCGAGGATAAGGACTTGGTTTGCTCTCGGAGTGAAAAAAGAACTGATCAACCTGAGGCGTGTCGCACTTTGAGATTCCTCAGTTTGTCAGGATGCTATCAGATCACAGATCTTGGCCTAAGAGTGCTGTCTCTGCGGGGGGGTCTCCCTCATCTGGAGCACCTCAATCTCTCCGGCTGCCTCCGCATCACTGAAGTGGGGCTTCAAGAGCTGGTCTCGGCCTGCCCCTCTCTGAACGATGAGCACTTTTATTATTGTGACAACATTAACGGTCCCCATGCTGACACTGCCAGCGGATGTCAGAATCTGCAGTGTGGTTTCAGAGCCTGCTGCCGTTCTGGGGAGTGATCCCCACCCTGCCCTCCCTCTTGTAATACTTCTGTAGCTGTATATGCTTCCATAATGCACTTTACACTAGGAATACCATTCAATGTGATTTCTTTCACTTCTAAATGTTGTACATTGAGAAAAGGAAAGGGTTTGTCTTGGGATACAGGTTCTCCTATTTTTGCCTTTGCAGCTGTATTATAAGAGATGCATCTGAGAAATTGTTTATCattgctgtttgtttattttatctgcaTCAATAGTAAAGTTCAAggtagatgtatttttttctcgCTTCATTTGAATTCATGCTTTTGGGAGAGTCCGAACTGGAAGAAATGAACTAGAATCACTTATAGGgagatatttaatttgaattattatagAATAAAATCCATTCTTGGGCACAGAGATGAAGACAAAACTGTTGAACAGCCATGCttcacatttgaattaaatgtaaataattatatttgtggGGAAATACTTGATTCTGATCAGTATAAGGAAATATTAAggcttttctgaaataaaatgtgttttagacATAGCAAAGATTGGGGAGCTAGTTATTTCATGACTTCTAGGAACTCTTTTCTCCTTGCTGGTGTGACCTTGATTTGATCATTGCAACACTGAGCTAATTTTGGATTATCTGAGCAAGTTGTTACAGGACTCAGGACTCGGTCATTTGTAGATCTATAGCTTTTTTCTTCATGTCTAAGCTGCTCCATGGGGATCTAATGTTGTTTTCTGAATTAGATTTTTACTTGCCCAAACATGGATTCTCCCTTAAAATAGAATTTAGTCAAACAAATTCTCATGATCTTTCAAAGTTCATGATTGAATTGTAAGTAACTGGCTACTGCTAAAGGGTTATAAAAACAGTGTGATTATAAATCCCAACATGTTTATAGTTTGGGCTGCAGTGATTACATTTCTGTAAGAATATGGCCTTTTGAAAGACCCAGACATGCATCTTGACTCTCAATTACTTTGCTGAACCTACAAAAACTAATATACAACAATAGGTTCTTATACAGAGACTGTTAATGGACTCCAGAGTAGTGGCGGAGGCTCCCTACTATCAGTGCTGATTTATGGATCATTGGTTtcttaaattacaattacaaataaaacaagtcagattcatttgcattgttttgttctgttctgttcactACAATTAAcctaaaatgtgtatattttctttgtatagACAGGaacttgttttctgtatttgttttgaaatttgtTTGGCACGGTATAATATCTATAGAGTCCAGCTTGTGCACACAGGTCTTGTAACCCTTCTATTTAAGGATTTTAATGTCTAACTTCTCTGATTTcctagttttattttaagtctcATGATTTATCCATTTGATAGTCCtcttttgaattttgttttaatcaggtAATATGATgctttataaaaatatgcatttaattttcatgtttgtgtgcaGGACCAATGTTGGAGACTCTTTTGCATGATAACATTGTCTAATGACAGAGTTCTGCCCAAGGAAGAACATCCCAACAGATGCGAACTGTCATTCAGCTGAAAAGAGAGGGAGTATTCCTCCACAGTTCACATAGATTAACCGGTAAGGGACACAGATAGTCGGGTTGTTTGCTGCAGTTGGGCAGAGTCCTCAAGGCTATTAAACTCCTTCCTAGGAGAAACCATTTCACTAGTTCTGTGTGAAATCCAG

Function

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10271 FBXL5; F-box and leucine-rich repeat protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114003 lncRNA upstream 450425 11416521 ~ 11416740 (+) True G91387
TU114001 lncRNA upstream 452063 11408688 ~ 11415102 (+) True G91386
TU114002 lncRNA upstream 454745 11408294 ~ 11412420 (+) False G91386
TU113973 lncRNA upstream 575589 11290288 ~ 11291576 (+) True G91363
TU113969 lncRNA upstream 579002 11287861 ~ 11288163 (+) True G91361
TU114112 lncRNA downstream 56154 11935627 ~ 11935961 (+) True G91480
TU114113 lncRNA downstream 56628 11936101 ~ 11936339 (+) True G91481
TU114123 lncRNA downstream 95936 11975409 ~ 11975612 (+) True G91490
TU114194 lncRNA downstream 556271 12435744 ~ 12435984 (+) True G91545
TU114199 lncRNA downstream 610610 12490083 ~ 12490296 (+) True G91549
AMCG00017561 mRNA upstream 342151 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017560 mRNA upstream 464494 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017552 mRNA upstream 1971732 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017553 mRNA upstream 2198189 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017551 mRNA upstream 2494970 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017577 mRNA downstream 144783 12024256 ~ 12024505 (+) True AMCG00017577
AMCG00017578 mRNA downstream 145060 12024533 ~ 12029958 (+) True AMCG00017578
AMCG00017575 mRNA downstream 219517 12098990 ~ 12118066 (+) True AMCG00017575
AMCG00017576 mRNA downstream 250190 12129663 ~ 12130950 (+) True AMCG00017576
AMCG00017581 mRNA downstream 268796 12148269 ~ 12158241 (+) True AMCG00017581
TU113887 other upstream 2283885 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 3113384 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 3177759 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 3734311 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 4173818 7692585 ~ 7693347 (+) True G90881
TU114078 other downstream 141 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 2157403 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 3197852 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 3233137 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 3987558 15867031 ~ 15867634 (+) True G92123

Expression Profile