RNA id: TU114018


Basic Information

Item Value
RNA id TU114018
length 1757
lncRNA type sense_over
GC content 0.37
exon number 3
gene id AMCG00017563
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11504024 ~ 11506820 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGAGGCTGGTTCGTCCTTCTTGTCCGCTGCACCGCAGACATGTCTAGGAACACCAGAATCACTGTGATATTCGGCGGTTTTGTCGCAGCTGTTGCGGCCGCATTTTACCCCATATTTTTCCACCCTCTCACGCATGTCAGCGAATACAAGAAAGTCCAGCAAGAGAACAGAGAAGGAATCAATCAACAGGATGTCCAGCCAGCAGgagTAAAGATATGGTCCGATCCCTTCAAATCGAAGTGAAGCCTCATTGACAGTGAGGGAATAGCTGAGCAGATGCGCGCTGGTACTGTGGTACACCCCTACCCAGTGAAGAAAGTGGAGAAGATTACCTACTAcatcatgtataaaaatgtgggggtgctttgtttttttccttttctttttacatgAAAGAGGTTGAGCTTTGGCTTTTACCTCTGATGTTAAATCCACTGAGATGTGAATCTCCTGAAGGACGATGTTCAGATTGTATGCTGCAGTACAAGAGTGCGATGCATTCAGGCGTTACAATATGTGGACTCTATGAGCATCAGCAACTACTAAAGGCCCCACCGGTGTTGTCTTCAAATATAGCAACTATGACTCTTATTTATACCGTTTAGCCAAGCTTCACAAACTGATCACAACATCTAAAAGTAAACCACGTATGAACAGCTAAAACGAAATGTCGACACTAATccatcacatttacatttacaaattgaaTCGCCTCATTGTCAGAAATCATGTTTAATATACACAGTGTTTGAATAATTCATAATCTTTGCATTCCCTGCCTGtatccaaatatatataacaatcaaatgatgctatggaaagactggtttgaatCTTAAGTTGTATCGTTAGTGCACTGTGACCAGGGTTGGCCATGGTATTCAATGATGTGTGAAAATAAGTTAAAGCTGTAAACTGTAAGTATTGAAAGAAGACTAACTGGcaaatcattgtttttcttttttcaatttttttggaTAATAAAAGTTTTGTGCTGAGAAGTGATTTTTTTCTACCATAAATAAACTAGGAGCATagatatttacaaaaaagtTCCTTAAATTTGCAGAGACATTTAAGACTGATTTGAAAGCAAATGGTTTCTCCTGCACTCTTCATACTTCAACTTTTTTCTCAAGCACGGTCTCGTTAGTGCTTTAGGTAACATCCCAAAAGTCTTGTAAAGAAAAGGTTAAAtgaaagaaatctgaaaaagtGTGCTTGCATTGCACATTTTAACAATTGGTGTCTGCTTCCATGGCAGACAGGTTTGCCTTTACtgattaatttctaaaatatcCAGCTCCTTAGCTACATGTCAAGGTGTTGAAACCTACATCTATTAGTCTTTAATTTCCTCTTTGCTCAGTTTTAGAGGCGGTTTTCCATGCTTGCTGAAGTAAAGGTCAGTGAGTTGCCCCTGCTCTTGGTTGCACACTCTTGTGTATGTCGCTGTTACTTATTTGAGAGATCTAATTTCACTTGTATGTTACAAAAGATAATGACAACACATTAAATCTTTCAAACTAGcagctgtattatttattccttcGAGAAACTCAATTTATGTTCCCAAAGAAGTTAATCAAATATTGGCTAAAATAGAAGTTAAGAAAAATGCcttaatatatgtaatatatgtaatgatagttttactttttaagattgctttgaatttcaaaaaatgtaaaaaaaaatttgaGGCATTTGTTTCTGAAGCAGATTTTCAGGAAAAGCAGGAATGTGTGCCAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113996 lncRNA downstream 106563 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 213060 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 216131 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 235699 11268106 ~ 11268595 (-) True G91359
TU113963 lncRNA downstream 352596 11151378 ~ 11151698 (-) True G91355
TU114095 lncRNA upstream 321203 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 324628 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 370555 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 804231 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 834637 12341442 ~ 12341735 (-) True G91539
AMCG00017566 mRNA downstream 80349 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017572 mRNA downstream 116882 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017557 mRNA downstream 188494 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017558 mRNA downstream 554585 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 556289 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017571 mRNA upstream 24305 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017570 mRNA upstream 235679 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017564 mRNA upstream 278835 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017573 mRNA upstream 295838 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017574 mRNA upstream 336676 11843481 ~ 11851614 (-) True AMCG00017574
TU113928 other downstream 1007190 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2748387 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2989339 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3507699 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3671702 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2926353 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4360142 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4523597 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4523651 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5961800 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile