RNA id: AMCG00017564


Basic Information

Item Value
RNA id AMCG00017564
length 2881
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00017564
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11785640 ~ 11796072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGCTCCAGTTTGCTGCTCAATCCAGTCGGAGGCTCAATAGCATTAACACTGCAGGGGAGGGACTCTCTGCCCAATCCAGGATCCTACACAGACCCGGGACAAGCCAAATCCGCCCGATCCCTGACCAGCATCACACTCCTAATCCCATTGCCTTGACTAGACCTGACTCCAGGAACCTCCGAGACAGAAAAAGGACAACTTTATTCTGCTTTAATCCATCTGCACCCATTGATCTTTTCACCAGAATAAACCACCCCTCCTATTGAGATACTTCTGCTTTTCCCTTACCTAAGAGAGGCAgctttttaaagtgatttgCGTCTGTTAATCATAATCTGTAAGGATGAGAAGCTTCACTGGATCCTTCATCTTGTTACTGGTGCTTGCAGTAAGAGCCCAGAAGTTACCCACTAGGGATGAGGAACTCTTTCAGATGCAGATCCGAGACAAATCTCTTTTTCATGACTCATCTGTTATCCCAGACGGGGCTGAGATCAGTGGTTACCTCTTCAGGGACACACCCAAAAGGTATTACTTTGTTGTTGAGGAAGACAATACCCCTTTGTCAGTAACCGTGACACCATGTGATGCACCTCTGGAATGGACACTAAGCCTTCAAGAACTTCCTGAAGAGTCCAGTGGAGATGGCTCAGGTGAACCAGAACCACTAGATCAACAAAAGCAACAGATCATCAGTGAGGAAGGCACAGAGCTTTTTTCTTACAAAGGCAATGACGTTGAGTCCTATGTAGCGTCTAGTTCCCCATCTGGCTTATATCAGTTAGAACTCATCTCTACAGAGAAGGACACAAACTTCAAGGTGTATGCCACCACCACTCCAGAATCAGACCAGCCTTATCCTGAGTTGCCATATGATCCACGGGTGGATGTCACTTCCCTGGGACGCACCACCGTCACCTTGGCATGGAAACCTACCCCTACTGGTTCTCTGATGAAGCAACCCATCCAGTATTGTGTGGTCATCAACAAGGAGCACAACTTTAAAAGTCTTTGTGCTGTGGAGGGAAAATTGAATGCTGATGACGCATTTATGTTGGCACCCAAGCCGGGATTGGACTTCAGCCCATTCGACTTCTCTCACTTTGGATTCCCCTCAGAGAATGACTCTGGCAAAGACCGGTCTTTGGTGGGTAAATCAGTACCTGGAAAAATGTCTCGCTCATACACAACCAAGCAAAAAGTGGATCTCCAGAAAGTTTGTATAGGGAATAAGAACATCTTCACCGTGTCTGAACTGAAGCCTGACGTGCAGTActattttgatgtatttgctGTGAACACTGTTACTAACATGAGCACGGCATATGTTGGCACATTTGCCAAAACTAAAGAAGAGGCTAAGCAGAAAACAGTGGAGCTAAAAGACGGGAAAGTCACAGATGTGTTCATCAAGAGGAAGGGGAGCAAGTTCTTGAGGTTTGCCCCAGTATCCTCACACCAGAAAgtcatgttttatgttcattcTTGCTTGGATGCCATCCAGATCCAGGTGAGGAGAGACGGCAAACTCCTGCTTTCTCAGAATGTGGAGGGCGTACGCCAGTTCCAGCTGAGAGGAAAACCCAAGGCTAAGTACCTGATTAGACTGAGGGGCAGCCGGAAAGGGGCATCCATGCTGAAAATCCTCGCCACTACAAGGCCCAACAAACAGCCCTTTCCTTCTCTCCCCGAGGATACCCGAATTAAAGCCTTTGATAAGTTGCGCACTTGTACCTCCGTGACCGTGGCATGGCTGGGAACACAGGAGAGGAATAAGTTCTGCATTTATAAAAAGGAAGTAGACGACAGTTACAATGAAGAACAGAGGAAAAGAGAGCAGAATCAGTGTACAGGGCCAGAGACCAGGAAGAAGTCTGAGAAAGTCCTCTGCAAATACTTTCACAGCCAAAATCTACAGAAAGCTGTCACTACAGAAACAATAAAGGGCCTTGAGCCTGGCAAATCCTACCTACTGGATGTTTACGTTGTAGGGCATGGAGGCCATTCGGTCAAGTATCAGAGCAAACTGGTGAAAACAAGGAAGTTTTGTTAATGactctgaatatatatatatatatatatatatatatataaaaagtttatttaactCTAAGCGATATTCTACTAAAGAGTGTATACAGACTGACTACTCATGCAGCTGAGAGGCTGTGCCAGTATTTGAACTGTGTAGAAAGATATCAActtgtatatttatgtttacattatTCAGCGGTTGTTTGGACAGATTCGGAGTGGTGCTCCCAGACAGCACATGGCATTTGCGTTAACATGGGTCCATGTCTGACCATAACATCCAGTCCAGTGACGAGAAGGAACAAAGGGTTCAAGGCAGGAGAGTTCTCATCGACTTTCTTCATCACTGCATGACTTGCATTTCATCATTCGGTAGTACTAAGAAGTGCAGAGACAATTCATATAAAACTGTCTGCCTTGTTATTCACTCATACAAGTACATTTAATTCGTAGaagaattttaaattattttataaatttctgcctttttaaaatattattattataattttgaaaaattgtaaatctattaaaaagtaattgacCTTCAGATGTAATCTCAGAGTTTCCTAGACTGCATCTGGAAAGTTTCCTTTGCTATTGTAAATTTATTTCCTGTCATGTGATcgattaaatgttttattatgtctTTTATGTACAAAGTTGTTCTACAAATATTCATGtacataaaaactaaatatataacaattacaTATTGTGTGATATTTTTGGGAGTGGATGTTTTGGGTGCGTGTAAAGAAGttcacaaacataaaaatacagattttaaagaacattttgaatTCACTCTGCACAGCTGTGTATCTATTACATTTAACtccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114018 lncRNA downstream 278835 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 387909 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 494406 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 497477 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 517045 11268106 ~ 11268595 (-) True G91359
TU114095 lncRNA upstream 31936 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 35361 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 81288 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 514964 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 545370 12341442 ~ 12341735 (-) True G91539
AMCG00017570 mRNA downstream 15543 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017571 mRNA downstream 249255 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017563 mRNA downstream 278820 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017566 mRNA downstream 361695 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017572 mRNA downstream 398228 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017573 mRNA upstream 6571 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017574 mRNA upstream 47409 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017569 mRNA upstream 82808 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017567 mRNA upstream 108766 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017568 mRNA upstream 137179 11933251 ~ 11938533 (-) True AMCG00017568
TU113928 other downstream 1288536 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3029733 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3270685 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3789045 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3953048 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2637086 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4070875 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4234330 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4234384 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5672533 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile