RNA id: AMCG00017566


Basic Information

Item Value
RNA id AMCG00017566
length 1780
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00017566
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11414328 ~ 11423945 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagaAGCAATGCGAAATTACCTAAAGGAGCGAGGTGATCAAACTGTACTAATTCTACATGCAAAAGTTGCACAGAAATCTTACGGAAAtgaaaaaagGTTTTTCTGCCCCCCACCTTGTGTTTACTTAATGGGAAGTGggtggaagaaaaagaaagaacaaatggAGCGAGATGGCTGCTCTGAGCAGGAATCGCAGCCATGTGCATTCATTGGAATTGGGAACAGTGACCAAGAAATGCAGCAGTTGAATTTGGAAGGAAAGAATTATTGCACAGCCAAAACTTTGTACATATCTGACTCCGACAAGAGAAAGCACTTCATGTTgtctgtaaaaatgttttatggtaATAGCGATGACATCGGTGTATTCCTCAGTAAACGGATTAAAGTCATCTCCAAACCTTCCAAAAAGAAACAGTCCTTGAAAAATGCAGACTTGTGTATTGCATCAGGGACGAAAGTGGCACTCTTCAATCGACTTCGCTCTCAGACTGTGAGTACGAGGTATTTGCACGTAGAAGGAGGGAACTTCCATGCAAGTTCACAGCAGTGGGGAGCCTTCTACATACATCTctTGGACGATGAAGAGTCAGAAGGTGAAGAATTCACAGTACGAGACGGCTACATTCATTACGGCCAGACTGTAAAACTTGTGTGTTCAGTGACTGGCATGGCACTCCCCAGACTgATAATTCGGAAAGTGGATAAACAAACAGCATTGCTAGACGCGGATGACCCAGTATCGCAGCTCCATAAGTGCGCTTTTTATTTGAAGGATACAGAAAGAATGTATCTGTGCCTTTCTCAGGAGAGAATAATCCAATTTCAAGCCACTCCATGCCCAAAAGAAccaaacaaagaaatgatcaatgACGGAGCCTCATGGACAATCATCAGCACAGACAAGGCAGAATATACCTTCTATGAGGGGATGGGGCCTGTCCATGCTCCAGTTACTCCAGTGCCTGTGGTGGAAAGCTTACAGtTGAATGGTGGTGGTGATGTAGCGATGTTGGAACTCACTGGACAGAATTTCACTCCTAATCTTCGAGTTTGGTTTGGGGATGTGGAGGCTGAAACTAtgtacagGTGTGCAGAGAGCATGCTCTGTGTTGTTCCAGATATTTCTGCATTCCGCGAGGGATGGAGGTGGGTCCGCCAGCCAGTCCAGGTCCCGGTCACTTTGGTCCGTAATGATGGGATTATTTACTCCACCAGCCTTACTTTCACATACACACCAGAGCCAGGGCCCAGACCACATTGCAATGCTGCCGGGGCCATCCTCCGGGCAAACTCGAGTCTGATGGCGTCTGGTGAATCCAACACAAACAGCGAGGGAAGTTACACAAGCGTCACCACAAATTCTACCAATGTCACGTCAGCAGCAGCAACGGTAGTATCTTAACCTACAAACTGTCACAAAAGACTTCAAACTGACTATTCAAGtgctgcataaaaataaaaataaagaagaagaaaggaaaaactttAATCTTCGGCACCCTTTTGTGGTTTCATAGGGACACTCCTGTTAGATCTGAGGGCATATATGGTTTGTTTGGAGCCAAGATCAACAACAGGATCAATAAAGAAACCGCAACAATGATACATCAGCCATGtataaaactattattaaagaaaaatctatttttcgctttttcttttgttttttgttttttatttttgtttttattttgtttttgttttttgtttttttgtaaagggGCAAGATGTATTAATGTGGGTGGGACTGAAGGTTAAGAAAAGTAGAAGAAAGA

Function

GO: NA

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113996 lncRNA downstream 16597 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 123094 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 126165 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 145733 11268106 ~ 11268595 (-) True G91359
TU113963 lncRNA downstream 262630 11151378 ~ 11151698 (-) True G91355
TU114018 lncRNA upstream 80349 11504294 ~ 11506805 (-) False AMCG00017563
TU114095 lncRNA upstream 404063 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 407488 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 453415 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 887091 12311036 ~ 12311604 (-) False AMCG00017582
AMCG00017572 mRNA downstream 26916 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017557 mRNA downstream 98528 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017558 mRNA downstream 464619 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 466323 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 918178 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017563 mRNA upstream 80079 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 107165 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017570 mRNA upstream 318539 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017564 mRNA upstream 361695 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017573 mRNA upstream 378698 11802643 ~ 11810656 (-) True AMCG00017573
TU113928 other downstream 917224 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2658421 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2899373 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3417733 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3581736 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3009213 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4443002 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4606457 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4606511 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6044660 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile