RNA id: AMCG00017569


Basic Information

Item Value
RNA id AMCG00017569
length 5670
RNA type mRNA
GC content 0.49
exon number 37
gene id AMCG00017569
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11877360 ~ 11900600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcGCAGGGACGACATACAGTGTGGTAACAGACATGCGTAGCGAAATTACTATTGTAAAGAAGTTACATGTGCTCTGTTTTTGTCACAGTATACTACTGTTAGACCATTAATTACAATACAGACTAATCCTCCGGTCATATTTAGTTTCTCGTAACCGCAGGGTATGAAGCCACTGTAATTACTTCTTCAGTAACTAATTTCTGACCTAACCTAcattacacacacgcacaggccTGCTAATCTCTCATCTAGCTAATTGGCAGTTGCTATTGTTTTTGCAGAAATGGGTGCATAGCCCAGCGCCAgctttttgtgctttttgttttttaacgcAAGGAAATGGCTTCTCCAAGTGATCTtcgggagaaaataaaaaaaaagaggagggCGCTTCAAGAGTCTTTGACAAAGACTAGAGATGATGCTGATATGCAGGCTCTCTTCACCCCAGAAATGGAAATCAATAAAGAAAACGAACAGTCCATTGTAGAGTCCAAAGCAGAAAGCATCCTGCAGCAAGAAGCCTCCTTAGAGTCTACAAGTCGACTGAAGAGCTTTCATGACAGAGAGCTTGTAACCAGCTCTGACAGAGAGGTAGATGGCGATGAATTCAAAAGGAGGGATGGTTCATCTCTTGTTGATTCAAGAGTCAGATTTCGAGACGCAGCAAGCAGAATCGAACAGAAACCTGagACAGAGACTGGCCACCCTTCAGCAGAGGAAGCTTTCAATTTCTTCACTTTCAACTTTGACCCTGAACCTCAGGAGGCAGGAGAGAAAGGTAAAAAGAAGAGGATACTGAGGCGAGGTGAGGggcagggagaggaggaagaggctggggaggaggaagaggaggaggcagggatgactgaagaggaagagaaagaggagcAGGAATCTGAGGAAAAGGAAGAAGATGCCCCTCTTGTAAGAGAACAGGATGAAGACCTGTTTATAATTGATCAAACTGCTCAGGACTTCCTAGAAGTGAAAGCAGCAGAATATGAGGGCTATAACAGCCGGCTTCAGAAGGAGAGTGGGCTGCTGTTCACCCCAAGTCTTCTCACAGtacCGGCCTCTAATAAGGTTCCTGAGAACATGAAGCCTCGTTATCTAGAGGACGAAGGGCTGTATGTGGGGGAGAGGCCTCAGGTATCCCTAGCCAACCAGAACATCCTGGAGAATAGGATCCTGCAGAAGGAGGAGGGTAAGAAGTGGTTTGGCGACGATGGCAGGATCATAGCGTTGCCAAACCCTATTAAAGAATCTTTTACAAGACCTCCAGTGTTTTCCCTGGAGGAAGACCTAGATCCAGTGCTTGAAACTGTATACAGGAAGGCAGTAAAGTCCAAGAACGCCAGCCGCTACGCTCCCGGGACCGGGGAACCGCTGGGGGATTTTCAGCTGGACGTTGACGTCTCAGGCTTGATTTTCACCCACCACCCTCTATTCAGTCGGGAGCATGTTCTGTCTGCGAAACTGGCTCAAATGTACGACCAGCTCCTGACGAGACAACAGAAGAACATCACAGTCCTCCTCACCGACAAGctaCATGCTCTGAGGAATGCTGTACGTAATATCACAGAGCAACATGGTGGGCCGGCTCTTAATCCAGTGACACAACACAGGATAGCGGAGTATAAATCTGAAATAAGGCACACTCGGAAACTGCGAGATGCAGAGCAGGAAAAAGACCGCACCTTATTGAGAAACACTGTGAAGGTTTGGAAGGAAATGAAGTCCTTGCGAGAATTCCAGAGATACACTAACACACCTTACAAGCTCTACCTGAGAAgGGAGGAAGTGAGCCGGGTGTCAGATGAGCGACTGTATGAATCTGAAATCCAGGCAGAGATCAATGAGCGAAGGGAAGAGTTTCAGGAGGAGTATCAGAGGAAACTCTCAGAGTACAAAAGAGAGTTTGAGGAGTGGAAAGCCTGGAAAAAGAAGCAGAAGGTgagaaggaagaagaagaagaagcaacAGCTgccagaggaagaggaggaggaggagggcagtGAATTGGAGCTGGGAGAGGAGCCCTCGAAGCCAAGTCCTCCTGAGTGGCTGGACGAGGAGGCGCTGGAGGAGCAGGTCCGGGAGAAAGCAGCCAGCATCCGCAGGAAGCCCGGGGAACCCATCCTCATCCCAGAGCTGAGCACGGCCGGCAGCGTCACGGCCAGCGAGCAGTGTCCACGGGGGGAGATTTCAAGAAGGGAGGATGTCCTCAAACGCTCAGTCTTTGTGAAAGTTCTCTACAACAACAAGGAGGTCTCTCGGACGGACAGCCGGGTGCTGAACTCAGATTTCAGAGTCCACTTTGGACAGATCTTTAATCTGAAAATAGTCAACTGGCCAGAATGTGTGAAGCTGCAGGCATTAGACACAGTCGAGGGAGTTCAGCACACCGCTGTAAAGAGAGTGTTTGAGACGGTGGGATCCTCCAATACCTTACTGGCTGAGGTGTTTGTTCCTATCCCTGACACCATCGTGCTCACAGGCAGCAGCCCCTCCGAGGAGCTGGAGTTTAGCAGTGACCAGCGCGTCATGTTTGACCACGAGGGCGTCGGCAGTGATGTGCCCTTTTCATTTGAGGCTGACGGCAGTAACAAGCTGGTCTTGTTGACCTCTGGAAAACTGTCCTGTTGTGTGTCGTGGGCTGTGGCAGACAACAGCATTCCACTGGTGCCTCCTGTTGCCCAGCAGCATGGGGGGGTTCACAGTGCACTGAAGCAGTTGGATGCCATTGCATGTATCGGGGCTTCTGGATTAGGTGACATGAAGAAACTGGCAAAGTGGGCTGCTGAGTCCCGTATGGATCCAAACGACCCCAGTAACGCTGCACTCATGCAACTTCTAACTATTGCCAGCAGTGGGGAGGTGCAGGTGCCCGATTTCTTCCGCCTGGAGCAGCTTCAGGAGGAGTTTAACTTTGTGTCGGAGGAGGAGATCCAGAGATCAAAGCGGTTCAGACTGCTGCTGCTCAGGAACCAGGAGGTGCCAGAGTTCAGGAACTACAAGAGAGTCCCTGCGCTGGACAGAGAAATCTCAGACAAGGTGTTCCAGGAATATGAAAGGAGACTGCGTGCAACAGATATTGTGGATTCAAAGGAACATCTAGATGCCCACAGAGCGCTGGTAGCCAAATATTTACAAAAGctcAGGGAGTCTGTGATCAACAGATTTGTGATCGCAAAGCATAATTTCATCCTGTCCGACCTTGTTGTTGAGGAAGAGGTTCCCAGCATTGGGGTTTTGGGCATCAATCTGTTTAAACTGGCAGAACCCAAGCGACCTCTTAAGCCCAGaagaaaggagaggaagaaggtGACGGCACAGAACCTGTGTGATGGAGACATTAAACTCCTCATTAATGTTGTCAGGGCCTATGATATTCCCATACGAAAACCTCACACAAGTAAACCTTCAGTAGTGTCAAAATCTGCCAGGTCTTTCACTGAGGGCATTGCTGCCGGACAGTCATCACAGAGTCCAATGCAAAATAACGACTGGCCTCTGAACCAGGTTCTGATTCGGCCTTTTGTTGAGGTGACGTTCCAGCGCGCTGTGCGACAGACAACAACGGCGGATGGGCCGAATCCAAACTGGAACGAGGAACTGGACCTGCCCTTTAGGGCGCCCAATGGGGATTATAGCACAACTAGCTTGCAGTCAGTAAAGGATGATGTCTTCATCAACATCTTTGATGAGGTTGTATACGATGTAATAGAGGATGAGCAGGAGAGAGGCGGTGGAGTTCACACTCGAGTCGAGAGACACTGGCTGGGATCTGTGCGCATTCCCTTCACCACCATTTACCTCCAGTCACGGATCGACGGTACTTTCAAGATCAACACTCCGCCGGTGCTGCTGGGGTACAGCAAGGAGCGCAGCTTTTCCACTGAGGGCGGGTACGGAGCCGTGAGGTGTCTGAGTGAAGGCTCCTACATTACACTCTTCATCACAATCGAGCCCCAGCTGGTTCCCGGAGAGACCGTGCGGGAGAAGTTTGACACCCAGGAAGATGAGAAGCTCCTCCAGGCCGCAGAGAGATTTGAGAAGGAAGCTGCTGCCAAGTTCCCCGGGCGTCCGTGCCTCATGAATGTCATTGACATCAATGGAAAGACCGTATTCATCACTCGATACATCAGACCTCTGAACCCACCTCAGGAGCTGCTCGATGCCTTTCCTAACAGTCCACAGGAAGCCTCTGAGCTGGTGGCCCATTATGTTTCCCTCATACCATCCCTGCCTGATACTGTTTCATTTGCTGGCATCTGTGACCTGTGGAGTACCTGCGATcaATTCCTGGACCTGCTGGCTGGGGATGAGGAGGAACATGCTGTTTTGCTGTGCAATTATTTTCTGGCAATGGGCAAAAAAGCTTGGCTTATCATTGGCACTGCTATTCCCGAGGGGTCGACTGCTTATGTACTGACATTAGAACAAAGTCGATACGTCATCTGGAACCCCAGCAGTGGCCAGTTTTATGGCCAATATGATACCTTCTGCCCCCTGCAAAGCGTGGGATGCCTTGTAAATGCTGATAATGTGTGGTTTAATGTCCAGCAGTATGCCATCCCAATGAGGATGAGTTTTGACACCACTAAATCCAAATTCTGGAAACCATTCTTCTCGAGAAGTTTCTCCCACCCTGGCCTGTCCAGTATCCAGCCTGAGGAGCTCGTGTATCGCCGCACAGAtaaggcagcagcagcagaactACAGGATAGGATTGAGAAGATCCTGAAGGACAAGATCATGGAGTGGCGCCCCAGACACCCGACCCGCTGGAACCGGTACTGCACCTCCACGCTCAGGCACTTCCTGCCCAAGCTGGAGCTGAGCGGAGGGAAGGACGTGGGGGACGAGCACAGGATGGAGCTGCAGAGTCTGCTGGGGGATTACAGGATATCTGGGTTTCCGGTGCACCTACCCTTCTCTGAGATCGGCCCTGTGGTGGAAGCCGTGTACAGCACCGGAGTGCATAACGTCGAGGTGTCCAGCGTGGAGTTTGCGCTGGCTGTTCATGTCCATCCGTACCCGAACAACGTACTCTctgtgtgggtgtatgtgtCCTCTCTGATCCGTACCAGATAGATACAGAAgacttctctgtgtttttcaCCTTCAACTCCAGGCATTGAACCTCACATTCTTGCTTTTTCACCTGCATTATTTTGCGGTTAATCTATGTGAACTGTGGAGGAATACTCCCTCTCTTTTCAGCTGAATGACAGTTCGCATCTGTTGGGATGTTCTTCCTTGGGCAGAACTCTGTCATTAGACAATGTTATCATGCAAAAGAGTCTCCAACATTGGTCCtgcacacaaacatgaaaattaaatgcatatttttataaagcATCATATTacctgattaaaacaaaattcaaaagaGGACTATCAAATGGATAAATCATgagacttaaaataaaactaggAAATCAGAGAAGTTAGACATTAAAATCCTTAAATAGAAGGGTTACAAGACCTGTGTGCACAAGCTGGACTCTATAGATATTATACCGTGCCAAacaaatttcaaaacaaatacagaaaacaagttCCTGTctatacaaagaaaatatacacattttaggTTAATTGTagtgaacagaacagaacaaaacaatgcaaatgaatctgacttgttttatttgtaattg

Function

GO: NA

KEGG:

id description
K19352 CC2D2A; coiled-coil and C2 domain-containing protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114096 lncRNA downstream 44982 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 49187 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 372075 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 481149 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 587646 11290328 ~ 11291234 (-) True G91371
TU114186 lncRNA upstream 410436 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 440842 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 595691 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 606027 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 616480 12517080 ~ 12521214 (-) True G91562
AMCG00017574 mRNA downstream 27266 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017573 mRNA downstream 68224 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017564 mRNA downstream 82808 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017570 mRNA downstream 108783 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017571 mRNA downstream 342495 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017567 mRNA upstream 4238 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017568 mRNA upstream 32651 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017565 mRNA upstream 54814 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017579 mRNA upstream 191870 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017582 mRNA upstream 407181 12307781 ~ 12322370 (-) True AMCG00017582
TU113928 other downstream 1381776 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3122973 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3363925 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3882285 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4046288 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2532558 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3966347 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4129802 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4129856 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5568005 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile