RNA id: TU114103


Basic Information

Item Value
RNA id TU114103
length 1910
lncRNA type sense_over
GC content 0.36
exon number 2
gene id AMCG00017569
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11877360 ~ 11900600 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACTCCCTCTCTTTTCAGCTGAATGACAGTTCGCATCTGTTGGGATGTTCTTCCTTGGGCAGAACTCTGTCATTAGACAATGTTATCATGCAAAAGAGTCTCCAACATTGGTCCtgcacacaaacatgaaaattaaatgcatatttttataaagcATCATATTacctgattaaaacaaaattcaaaagaGGACTATCAAATGGATAAATCATgagacttaaaataaaactaggAAATCAGAGAAGTTAGACATTAAAATCCTTAAATAGAAGGGTTACAAGACCTGTGTGCACAAGCTGGACTCTATAGATATTATACCGTGCCAAacaaatttcaaacagaacagaacaaaacaatgcaaatgaatctgacttgttttatttgtaattgtaatttaagaAACCAATGATCCATAAATCAGCACTGATAGTAGGGAGCCTCCGCCACTACTCTGGAGTCCATTAACAGTCTCTGTATAAGAACCTATTGTTGTATATTAGTTTTTGTAGGTTCAGCAAAGTAATTGAGAGTCAAGATGCATGTCTGGGTCTTTCAAAAGGCCATATTCTTACAGAAATGTAATCACTGCAGCCCAAACTATAAACATGTTGGGATTTATAATCACACTGTTTTTATAACCCTTTAGCAGTAGCCAGTTACTTACAATTCAATCATGAACTTTGAAAGATCATGAGAATTTGTTTGACTAAATTCTATTTTAAGGGAGAATCCATGTTTGGGCAAGTAAAAATCTAATTCAGAAAACAACATTAGATCCCCATGGAGCAGCTTAGACATGAAGAAAAAAGCTATAGATCTACAAATGACCGAGTCCTGAGTCCTGTAACAACTTGCTCAGATAATCCAAAATTAGCTCAGTGTTGCAATGATCAAATCAAGGTCACACCAGCAAGGAGAAAAGAGTTCCTAGAAGTCATGAAATAACTAGCTCCCCAATCTTTGCTATgtctaaaacacattttatttcagaaaagccTTAATATTTCCTTATACTGATCAGAATCAAGTATTTCCccacaaatataattatttacatttaattcaaatgtgaaGCATGGCTGTTCAACAGTTTTGTCTTCATCTCTGTGCCCAAGAATGGATTTTATTctataataattcaaattaaatatctcCCTATAAGTGATTCTAGTTCATTTCTTCCAGTTCGGACTCTCCCAAAAGCATGAATTCAAATGAAGcgagaaaaaaatacatctaccTTGAACTTTACTATTGAtgcagataaaataaacaaacagcaatGATAAACAATTTCTCAGATGCATCTCTTATAATACAGCTGCAAAGGCAAAAATAGGAGAACCTGTATCCCAAGACAAACCCTTTCCTTTTCTCAATGTACAACATTTAGAAGTGAAAGAAATCACATTGAATGGTATTCCTAGTGTAAAGTGCATTATGGAAGCATATACAGCTACAGAAGTATTACAAGAGGGAGGGCAGGGTGGGGATCACTCCCCAGAACGGCAGCAGGCTCTGAAACCACACTGCAGATTCTGACATCCGCTGGCAGTGTCAGCATGGGGACCTGGGAAGAGACAAAGGGATATTGCAGTTACAATCCGATTTTGTGTGCAGTAATGGACCCTGACAGACATACACATTAGTTCACAGCTGTATATACTTGTCGTATATAATATACCTACCAgtgaacaaactgaaaaactaattttcttTAGACAAATATGAAAGAGGACATGATGGAACTCAAATATTGGTGACCAAGTTCCAGACAAAGGAATGGAACAGACAAACACCCAAGGTTggcaaatataaaaaacacaaagccagAAGCCCAGTATATTCCAAtggaacacaaacactgtgatGGTCAGTGATTACAAAGGTGTAGTGATGAGGAAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114096 lncRNA downstream 43462 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 47667 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 370555 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 479629 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 586126 11290328 ~ 11291234 (-) True G91371
TU114186 lncRNA upstream 431699 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 462105 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 616954 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 627290 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 637743 12517080 ~ 12521214 (-) True G91562
AMCG00017574 mRNA downstream 25746 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017573 mRNA downstream 66704 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017564 mRNA downstream 81288 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017570 mRNA downstream 107263 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017571 mRNA downstream 340975 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017567 mRNA upstream 25501 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017568 mRNA upstream 53914 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017565 mRNA upstream 76077 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017579 mRNA upstream 213133 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017582 mRNA upstream 428444 12307781 ~ 12322370 (-) True AMCG00017582
TU113928 other downstream 1380256 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3121453 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3362405 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3880765 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4044768 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2553821 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3987610 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4151065 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4151119 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5589268 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile