RNA id: AMCG00017570


Basic Information

Item Value
RNA id AMCG00017570
length 1512
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00017570
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11742484 ~ 11770097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcttGGTATGTACGTGCCAGACAGATTTTTCCTGAAGTCTTCCAAAGTCCAAGATGGGATCGGTCTGTACACCGCAAGAAGAGTGAaaaagGGGGAGAAATTTGGCCCTTTTGCAGGTGAGAAGAAAATGCCCAACGAGCTGGATGAAAGCACTGATCCCAGATTAATGTGGGAGgttCGTGGGAATAAAGGAGACGTGCTCTATGTTCTGGATGCTAGTAATCCACGGCATGCTAACTGGCTGCGCTTTGTCCATCAGGCGCCATCACAGGAGCAAAAAAATCTGGCTGCTATCCAGGATGGAGAAAATATATTCTACTTGGCTGTAGATGACattgacacagacacagagcttctgattggttacttggacagtgatatggaagaagaggaggaggaggaggaaccCGTGAAAGACGACGACGAGAACAGCAAGGAGGCAAAGCATCTTGACTTGGTGAGGAAAGAGGACCACCCCTGCCCCCTCTGTGAGAACAGCTTCCCCAGCCAGGAGATTCTCGCCGCCCACCTGCAGACCCTTCACCAGAAGCCCAGCGAAGACAAAGAATTCAAGTGCAGGAACTGTGGGAAGAAGTTTCCGGTTAAACAGGCTTTACAGAGACATGTTCTTCATTGCACAGAAAATGTCAGTCCAGGAGACACCTCGAGAACACACCAGTGCTCCCTGTGCAGTAGCACCTTCAGCTCTGAGTCAAGTTTCGAGCAACACAAGGATGCGTGTAAAGGTGACGCCAGGTTTATTTGTAAAGCAGAAAGCTGTGGAAAGAGATTCAAGAGTAAAGATGCCTTGAAGAAACATAAAGGAAATGTTCATACAgGAAACGCTCGCAAGAAGCTGATGTGCTCCATTTGCAATAAGAAGTGTTCTTCAGCTGGGAACCTGCAGGAGCATCGAAAGGTTCATGAGGTCTTTGACTGCCCAGCATGTgacaaaaagtttatttcaactAACCAGCTCAAACGGCACATGATTACTCATTCAGAGAAACGCCCCTACACCTGTGAGGTCTGCAGTAGATCCTTCAAACGCCTTGACCAAGTGACAGCACACAAAATCATCCACAGTGAAGACAAACCCTACAAATGCAAGCTCTGTGGAAAGGAATTTGCACACAGGAATGTGTATAAGAACCACAAGAAGACTCACTCCGAAGAGAGACCGTTCCAGTGCGAGGAATGCAAAGCCCTATTCAGGACACCATTCTCCTTGCAAAGACACCTGTTGATACATAATAGTGAAAGGACGTTCAAGTGTGATCACTGCGATGCAACGTTCAAAAGAAAAGACACTTTAAATGTTCACATCCAGGTTGTGCACGATGGCCACAAGAAGTACAAATGTGATCTGTGTGAAAAGGCTTTTGTGACTCCCTCCGTTTTGAAGAGCCATAAAAAGACCCACACtggtgaaaaagaaaagatttgcCCCTACTGTGGACAGAAGTTTGCAAGTAATGGGACCCTCAGAGTGCACATACGAAGCCATACA

Function

GO: NA

KEGG:

id description
K22534 PRDM5; PR domain zinc finger protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114018 lncRNA downstream 235679 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 344753 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 451250 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 454321 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 473889 11268106 ~ 11268595 (-) True G91359
TU114095 lncRNA upstream 57911 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 61336 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 107263 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 540939 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 571345 12341442 ~ 12341735 (-) True G91539
AMCG00017571 mRNA downstream 206099 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017563 mRNA downstream 235664 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017566 mRNA downstream 318539 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017572 mRNA downstream 355072 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017557 mRNA downstream 426684 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017564 mRNA upstream 15543 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017573 mRNA upstream 32546 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017574 mRNA upstream 73384 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017569 mRNA upstream 108783 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017567 mRNA upstream 134741 11904838 ~ 11907394 (-) True AMCG00017567
TU113928 other downstream 1245380 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2986577 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3227529 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3745889 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3909892 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2663061 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4096850 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4260305 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4260359 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5698508 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile