RNA id: AMCG00017571


Basic Information

Item Value
RNA id AMCG00017571
length 2040
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00017571
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11531110 ~ 11536385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCTCGATCCAAGCACGGGGATGCTTCTACAGAAGTATCCAAAGACAACTCCTTTCCTCAAGAACTCAGtgACAATGTGGGGGGCACACCAAAGGAGCCAGTGATTCTGCCAGCCTATTCCACTGTGGCATTGATAGAAGACACAGCAGACGATCCCTGGGCCCTTCCCGAACTTCAGAGTACTGGACTCAAGTGGTCAGGTAGGAAGAGCCATGTGCTTCACTTCATTGTGTGTGAATTGGACACCAAGGGCAAGATCCTCCGGGTTTTGATTTCCATTGCcaaattttttttattgcttggaTTCCTATACATGTTTGTCTGCTCTTTGGATATCCTGAGTTCAGCTTTCCAACTTGTAGGagGGAAAGCCGCTGGGGACATTTTTCAAGATAACGCGATCTTGTCTAATCCCGTGGCTGGACTTGTGATTGGAGTTTTGGTGACAGTTATGGTTCAGAGTTCCAGCACCTCCTCCTCGATTGTGGTTAGCATGGTGTCCTCTGGGTTGTTGGATGTCCGGTCGGCCATTCCTGTTATCATGGGGGCAAACATCGGCACCTCTGTCACCAACACTATCGTTGCTATGATGCAAGCTGGGGACAGGAATGAGTTTCGGAGGGCCTTTGCCGGAGCCACTGTTCACGACTTCTTTAACTGGCTGTCAGTGCTGGTGTTATTGCCTCTCGAAGTTGCCACTGGTTACCTGTTCCGTCTCACACAGCTGCTCATAGATTCATTTAACCTCGAAACTGGGGAAGACGCCCCTGACCTACTTAAAGTTATCACCGATCCCTTAACGAAGATAATCATTCAGcttGACAAATCTGTTATCAACGAAATTGCCACGGGTGACCTTGCAGCAAGGAACAAAAGTCTGATCAAAATCTGGTGTAAAACTTTTACAAATATGACTGAAATGAATGTAACAGTGCCTGGGATTGACAACTGCACATCTCCTAGCCTTTGCTGGACAGACGGCAATTTGACATGGACCCTGAAAAATATTTCGGaaaaatttaatttagaaaaatGTAATCACATTTTTGTGAATAGCAATCTGCCCGATCTGGCTGTGGGCCTCATCCTTCTCGCCCTGTCCTTGTTTGTGCTCTGCACCTGCTTGATTCTCATCGTGAAGTTGCTTAATTCAATGCTGAAGGGACAAGTGGCTGTCGTCATTAAAAAGATTCTCAACACAGATTTTCCGTTCCCCTTCGCCTGGGTGACTGGATATATTGCCATGGTTGTTGGGGCAGGGATGACTTTCATAGTCCAAAGTAGCTCAGTGTTCACCTCAGCTATTACCCCTCTTGTTGGCATTGGTGTCATAAGCATTGAAAGAGCTTACCCACTCACCTTGGGGTCAAATATTGGTACCACCACGACAGCTATTTTGGCTGCCATGGCAAGTCCAGGAGAAACACTTGGCAACTCATTGCAGATTGCTCTGTGTCACTTCTTTTTCAACATCTCTGGGATCCTGCTATGGTATCCAATCCCCATCACGCGTGTTCCTATACGCCTGGCCAAAACTCTGGGTGATCGCACCGCTAAGTACAGGTGGTTTGCCGTCATGTACTTGGTTTTATGTTTCTTAATCCTGCCTCTAACTGTGTTCGGGCTTTCCGTAGCCGGGTGGCAGGTTCTGGTTGGAGTTGGCGTGCCAGTCATTGTGATCTTCTTGGTTGCTATTTTCATCAATGTCATGCAGTCCAAGTGGCCACAGTACCTGCCCAAGGTACTGCAGACCTGGGACTTCCTCCCTTTGTGGATGCACTCTCTCAAGCCCTGGGACAGGATTGTCACGTCTGTCATGGCCTTCTGTGGAGCTCgcgtctgctgctgctgcaagtgctgtaaaaaaaatagcagTGAAGAGGAGGGAACTGGTGAGAAGAAGACAGGGTCCCTTGAAATGTATGACAATCCAGCATTGGAATGCTCTCCTGAAACCTGTGAAGATAGTCAGGATGAtacactgaaaaacactgaacaaaCCAGCCAAACCACTCCCAAAACAACTAATTTGTAA

Function

GO: NA

KEGG:

id description
K14683 SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114018 lncRNA downstream 24305 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 133379 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 239876 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 242947 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 262515 11268106 ~ 11268595 (-) True G91359
TU114095 lncRNA upstream 291623 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 295048 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 340975 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 774651 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 805057 12341442 ~ 12341735 (-) True G91539
AMCG00017563 mRNA downstream 24290 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017566 mRNA downstream 107165 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017572 mRNA downstream 143698 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017557 mRNA downstream 215310 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017558 mRNA downstream 581401 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017570 mRNA upstream 206099 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017564 mRNA upstream 249255 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017573 mRNA upstream 266258 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017574 mRNA upstream 307096 11843481 ~ 11851614 (-) True AMCG00017574
AMCG00017569 mRNA upstream 342495 11878880 ~ 11900600 (-) True AMCG00017569
TU113928 other downstream 1034006 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2775203 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3016155 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3534515 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3698518 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2896773 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4330562 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4494017 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4494071 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5932220 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile