RNA id: AMCG00017572


Basic Information

Item Value
RNA id AMCG00017572
length 1182
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00017572
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11356805 ~ 11387412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGAAGGAACAGAGTTGTCCATGACAATTGCTCAGGTTGTCCAGAAACTGAAGGGGTCACATTTACATTCCCAGCTAGAAAAACAGGCCAAAGAGTGCTTACACAGGCCAGACATTCAGCTTGAATGTCTTAAAGATGATGTACGCAATTTTCTTAGGAACTCAGGTTGGGAAAAAAAGCTGCAGAATGCTGTATATCGTGAGTTGCATGTGCTTCCTCCTCCCAGTCACCCAGCTGCACCCCCAGAGCATATTAAGGAACCACTGGCATACATGAGAAAGGCACAGGCGAGCTGGGAAAAGCGTATACTCAAAAGCTTGAACAGCATGTGCACAGAATTGGGTGTTCCTTTGGCTCGAAAGAGACCTGTAAATGAACAAAAGGAGCTATTAAGCAAGTGGAATGAAATGGGAACTGATGAGCCagATTTAAGCCATTTCAGACCTGTGTATGCTCCTAAAGATTTTCTAGAgGTACTGATCAGCCTCCGCAATCCAAACTATGATATCAGTGATCAAGCCAGCTCCAAAGCTCACTGGGGACTGATCCAAGTTCCACTAAATGTGAAAGACATCCCAGAGCTGAGGGAAGCCTTTTCAGAATTGGATCTGACGAGTGGACAGCTTGGGATTGATGATCACACCAGTatatgtttgaaaatgaaCATGTTCGCATTGGGAAAAAAGGATGTGAAGCTGACTGCCAGTAATGATGATTACTACTTTGTGTTTGAAGATTACTTATATCAGCTGGGAGTAGAAGAATATGCTGTAATTTATCCCCCAAATGTTGCCCCTCTGTGTTTCCTTTATAATGAGCCTTCCAAGCTATACAGTGTTTTCCGGGAGATGTATGTGCGCTATTTCTTTAGACTTCATTCcatttcttcatcttcttcGGGTATTGTGTCATTGTGTCTACATTTTGAAACTCTTCTTCAAACTCACCTCCCACAACTTTTCTACCACCTGCGTGAAATTGGAGCACAACCGTTGCGTATTGCTTTTAAGTGGATGGTACGAGCCTTTTCAGGATACTTAGCCACTGATCAACTTTTGCTCCTATGGGACAGAGTCCTTGGATATAACTCACTTGAAATTCTTGCAGTACTGGCAGCTGCTGTGTTTGCTTTCCGCGCAGAGAATCTGATGGAGGTGACATCACTGGCTGCAGCTGAA

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113985 lncRNA downstream 65571 11290328 ~ 11291234 (-) True G91371
TU113970 lncRNA downstream 68642 11287855 ~ 11288163 (-) True G91362
TU113967 lncRNA downstream 88210 11268106 ~ 11268595 (-) True G91359
TU113963 lncRNA downstream 205107 11151378 ~ 11151698 (-) True G91355
TU113962 lncRNA downstream 288790 11067713 ~ 11068015 (-) True G91354
TU113996 lncRNA upstream 10108 11397520 ~ 11397731 (-) True G91381
TU114018 lncRNA upstream 116882 11504294 ~ 11506805 (-) False AMCG00017563
TU114095 lncRNA upstream 440596 11828008 ~ 11829693 (-) True G91466
TU114096 lncRNA upstream 444021 11831433 ~ 11833898 (-) True G91467
TU114103 lncRNA upstream 489948 11877360 ~ 11879337 (-) False AMCG00017569
AMCG00017557 mRNA downstream 41005 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017558 mRNA downstream 407096 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 408800 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 860655 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017556 mRNA downstream 994538 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017566 mRNA upstream 26916 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017563 mRNA upstream 116612 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 143698 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017570 mRNA upstream 355072 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017564 mRNA upstream 398228 11785640 ~ 11796072 (-) True AMCG00017564
TU113928 other downstream 859701 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2600898 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2841850 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3360210 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3524213 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3045746 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4479535 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4642990 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4643044 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6081193 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile