RNA id: AMCG00017574


Basic Information

Item Value
RNA id AMCG00017574
length 524
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00017574
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11843481 ~ 11851614 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTCCAGTGCTTGCATTTCTGCTCTGCCTGTGTTCGGAGCGATCCTGGGCTGACATGGGAACAACACcacacttaaaacaaataattgttggGAGATGTTACAATTATGTGACCATTGTAAATCCAAGTTCTAGGCTCAACTGTGAAGGTATATGGAGAGATTTTCAGGATGCTGTTCTTAAGGAAGCTCCTTGCAGTGTCTATGTCGAGAACTACAACAGATTATTCAGGACAGCACATCAAACTTTGCCCTGTAATAAGGGTTTGACTTTAACTCCTGTCCAGAGTGGTCATCTTGTGAACATCACCCAGTGGCTTCCCTATGGAAGAAAGCCTCAGAATATCATGTTTGGAAGTGTTGAGGTCAATAGCCTTGATCCAAAGAAAATCAACTATGTCAATATTATGGTGATTGGCAACTTGGAGGGACCATTCAGAGAGTCCTGTACCAGTGGTTCCATAGTAGATTTGATAAAGATATTACAGAACAGGGGTTTTCGATGGACTTGCACCGACAATGAT

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114096 lncRNA downstream 9583 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 13788 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 336676 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 445750 11397520 ~ 11397731 (-) True G91381
TU113985 lncRNA downstream 552247 11290328 ~ 11291234 (-) True G91371
TU114103 lncRNA upstream 25746 11877360 ~ 11879337 (-) False AMCG00017569
TU114186 lncRNA upstream 459422 12311036 ~ 12311604 (-) False AMCG00017582
TU114187 lncRNA upstream 489828 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 644677 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 655013 12506627 ~ 12509143 (-) True G91556
AMCG00017573 mRNA downstream 32825 11802643 ~ 11810656 (-) True AMCG00017573
AMCG00017564 mRNA downstream 47409 11785640 ~ 11796072 (-) True AMCG00017564
AMCG00017570 mRNA downstream 73384 11742484 ~ 11770097 (-) True AMCG00017570
AMCG00017571 mRNA downstream 307096 11531110 ~ 11536385 (-) True AMCG00017571
AMCG00017563 mRNA downstream 336661 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017569 mRNA upstream 27266 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017567 mRNA upstream 53224 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017568 mRNA upstream 81637 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017565 mRNA upstream 103800 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017579 mRNA upstream 240856 12092470 ~ 12097269 (-) True AMCG00017579
TU113928 other downstream 1346377 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3087574 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3328526 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3846886 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4010889 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2581544 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4015333 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4178788 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4178842 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5616991 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile