RNA id: AMCG00017577



Basic Information


Item Value
RNA id AMCG00017577
length 228
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00017577
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12024256 ~ 12024505 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGAACTTTGTTCTGGGGACAGGGCTACTGTGCCTTTTCACCCACGCttcactgacagacagagaccAGGCCCTGCTCATGAGGACCTGGTCTGAGAAGATGGCTGCACTCTACAGGAAGATGAAGGGTAAAAGCAGAGGAGGACATTCCCAAGCTGATCCAGGAAGAGACAAAGAGCAGAAGATGCCAGAGGAGCAGGTGGCATTCATCCTTAAAACAATGGAATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114123 lncRNA upstream 48644 11975409 ~ 11975612 (+) True G91490
TU114113 lncRNA upstream 87917 11936101 ~ 11936339 (+) True G91481
TU114112 lncRNA upstream 88295 11935627 ~ 11935961 (+) True G91480
TU114003 lncRNA upstream 607516 11416521 ~ 11416740 (+) True G91387
TU114001 lncRNA upstream 609154 11408688 ~ 11415102 (+) True G91386
TU114194 lncRNA downstream 411239 12435744 ~ 12435984 (+) True G91545
TU114199 lncRNA downstream 465578 12490083 ~ 12490296 (+) True G91549
TU114261 lncRNA downstream 682805 12707310 ~ 12710716 (+) True G91597
TU114286 lncRNA downstream 840682 12865187 ~ 12891356 (+) False G91619
TU114285 lncRNA downstream 865135 12889640 ~ 12891356 (+) True G91619
AMCG00017562 mRNA upstream 144783 11867165 ~ 11879473 (+) True AMCG00017562
AMCG00017561 mRNA upstream 499242 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017560 mRNA upstream 621585 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017552 mRNA upstream 2128823 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017553 mRNA upstream 2355280 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017578 mRNA downstream 28 12024533 ~ 12029958 (+) True AMCG00017578
AMCG00017575 mRNA downstream 74485 12098990 ~ 12118066 (+) True AMCG00017575
AMCG00017576 mRNA downstream 105158 12129663 ~ 12130950 (+) True AMCG00017576
AMCG00017581 mRNA downstream 123764 12148269 ~ 12158241 (+) True AMCG00017581
AMCG00017580 mRNA downstream 149339 12173844 ~ 12178118 (+) True AMCG00017580
TU114078 other upstream 143757 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 2440976 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 3270475 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 3334850 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 3891402 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 2012371 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 3052820 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 3088105 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 3842526 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 4110520 16135025 ~ 16135316 (+) True G92130

Expression Profile