RNA id: AMCG00017582


Basic Information

Item Value
RNA id AMCG00017582
length 1065
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00017582
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12307781 ~ 12322370 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTGGTCTCTGAGCCAACTATGCTTTACAGCAAAGCCTTCGCAGGAGAGGAAGATGGAGCTCAACAAGGCCGAGAAGGCCTGGAAACCTACAATTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCGTTGATGCGTCAAGTGAACGAGCTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGTGTCTTCTGAGGTTCAAAGTCCCGGCTGCTGACAAGCTGGGAGAGATGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGGCGAGGAGCGGCAGCGTCTATGTGACGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGTGGCGCACGATAGGCAACATCAGGTTCATTGGGGAGCTATTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACTGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAGAGAGAGGAAGACCTCCCCTCGAATCCGCTTCTTGCTGCAGGATGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGTGCACTGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGTCACGTGTCGGTCGGGCCAGAGCAGAGCGggccagagcagagcaggcCAGGAAGAGAGTGACTTTTGCGAAAGTACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGA

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114103 lncRNA downstream 428444 11877360 ~ 11879337 (-) False AMCG00017569
TU114096 lncRNA downstream 473883 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 478088 11828008 ~ 11829693 (-) True G91466
TU114018 lncRNA downstream 800976 11504294 ~ 11506805 (-) False AMCG00017563
TU113996 lncRNA downstream 910050 11397520 ~ 11397731 (-) True G91381
TU114187 lncRNA upstream 19072 12341442 ~ 12341735 (-) True G91539
TU114204 lncRNA upstream 173921 12496291 ~ 12499947 (-) True G91553
TU114209 lncRNA upstream 184257 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 194710 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA upstream 197767 12520137 ~ 12521214 (-) False G91562
AMCG00017579 mRNA downstream 210512 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017565 mRNA downstream 334097 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017568 mRNA downstream 369248 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017567 mRNA downstream 400387 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017569 mRNA downstream 407181 11878880 ~ 11900600 (-) True AMCG00017569
AMCG00017587 mRNA upstream 342161 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 348738 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017591 mRNA upstream 360056 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017588 mRNA upstream 382088 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017590 mRNA upstream 407661 12730031 ~ 12739099 (-) True AMCG00017590
TU113928 other downstream 1810677 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3551874 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3792826 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4311186 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4475189 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 2110788 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3544577 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3708032 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3708086 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 5146235 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile