RNA id: AMCG00017583


Basic Information

Item Value
RNA id AMCG00017583
length 1828
RNA type mRNA
GC content 0.39
exon number 18
gene id AMCG00017583
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12472948 ~ 12489169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGCTGCAAGGCAGGCAAGACCaggacaaacagaaataaacaactgTGAATTGCAAAACAGATCCAGGAATCCGGTGCATTTTGCAGCAGAAGAATACTTTTTTAGTAGAGGACTAAGAAGAGTGAACAGCTATGAGCTTCCAACAATAATGgagCATGGAGTTCAGAGCATTGTGACTGACAATAGATGCTTTAACCCTGGACATCCCCATGAAACTGAATACAACACTGTAGAGGAGGAACCAGAACGCGTCAGGATCCTACCTGCAAGACCCTTGGATTCTGAGCCAGACTATGCAGaTAGAAGACGTGATCTGCCTCGACCACCACAACACTCCTCTCTGGCCCCGAGGAGATTACTGAATGCTCCTCCAAAACTTCCCAAAAGAAATACCTCAGgaCCAAGTGTGAACAGAGACTCAAAACCAACCAGGATCCCAATTATTCCAACAGCTGGTGAAAGAACTAATATTGCAGATTTCCAGaatgtaCAGCCTCCACCAAGACCTCCTAAGCCAGTTCCAAGAGAACGCCAGCCTCTTCCTCCAGAACCAAGGATTTCAAAACCAGATTCACCAAGTACACACTCTGAGGCACCTCTAATGCCAGTCCCAGCAAGAAGAAatGTAAATTGTCAATCCAGTGtttttcaagcTTCCCCAACTGCAACTCCTCGTGAACCTCCAAGGTGCTCACAAGATCTGGAATTCAAAGACAGTCTAAATTCAAGTTCTATCAGGCCATCACATGACCAAGGATCCTTAATTACAGCTGTTACTAGAAATAAGCCAAACTACAATCATGAGTGGCcacaagttaaaaaacaaaccaaaaaacagagACCTTCTTCTGAGCACTATAATTTTGAGACACCCAGGGATCCAGGACACAGAACAATTCAGatttcacaTCACCATAACTGGTACATTGGAGCATGTGATCGATATGAAGCAGAAAACGCCCTGTATTCCATGAACACGGATGGAGGGTTCTTAGTGCGTGACTGCTCAAAGAAGGTTAATGATGAGCCCTATGTCCTGGCAGTGTTTTATGGAAACAAAGTGTACAACATTAAAATTAGATACATAGAGAGCAGCCAAAAGTTTGCACTAGGAACAGGACTATGGGGAAATCatATGTTTGATTCTGTAAGTGACATCATTGAATTCCACAAGGTTTTTCCATTAGTCCTGATTGATGGAAAGGACAAATCAGGGAAACAAAAGGACAAGTGTACCCTGAcatatgcattttcaaaagacaaaaaaaaccaaATACTGGGTTAGTTCTAGTTCTTCATGAAGTTCTTCATGTTATCTGTGTAACTGTGATATCAGTAcatgaatagaaaaaaaaaatcactctgTAATAGTTAAATTAACAAGTGCCTCATCAACCCTATGTTGATAAGAAATActgatgttaaatatttattaagctAACTATAAAGGAGTCTACCAGTCTATCTATTTCttttgcatataaatatattatatattcatagtGTTTATTAGTCTATTAATGTATTGAAGTGCTACAGAATCTAATATATCCACTACAAAAGGATTTCAATGAATACTAGAACATGTCACCATTTTAGAGAATGTTCCTTGTATAGAGTTATTTGTGCAAATCTGTGTAGATTGCTTATATTTCATAGAACACTGATGCCTCctaattactctgtgttccctgaaattaacaaaaatctTTCTTTGTTGTGTCAGTGAATCTTATAATCCTTTTTATCATAACCAGTGTACTCTATTTAACGTGGTATTTTTTGGAATACTGGGCTAATAAAAGGATGCCTTCTCTGTGTTAAAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114194 lncRNA upstream 36964 12435744 ~ 12435984 (+) True G91545
TU114123 lncRNA upstream 497336 11975409 ~ 11975612 (+) True G91490
TU114113 lncRNA upstream 536609 11936101 ~ 11936339 (+) True G91481
TU114112 lncRNA upstream 536987 11935627 ~ 11935961 (+) True G91480
TU114003 lncRNA upstream 1056208 11416521 ~ 11416740 (+) True G91387
TU114199 lncRNA downstream 914 12490083 ~ 12490296 (+) True G91549
TU114261 lncRNA downstream 218141 12707310 ~ 12710716 (+) True G91597
TU114286 lncRNA downstream 376018 12865187 ~ 12891356 (+) False G91619
TU114285 lncRNA downstream 400471 12889640 ~ 12891356 (+) True G91619
TU114318 lncRNA downstream 570687 13059856 ~ 13060646 (+) True G91649
AMCG00017585 mRNA upstream 75195 12393280 ~ 12397753 (+) True AMCG00017585
AMCG00017580 mRNA upstream 294830 12173844 ~ 12178118 (+) True AMCG00017580
AMCG00017581 mRNA upstream 314707 12148269 ~ 12158241 (+) True AMCG00017581
AMCG00017576 mRNA upstream 341998 12129663 ~ 12130950 (+) True AMCG00017576
AMCG00017575 mRNA upstream 354882 12098990 ~ 12118066 (+) True AMCG00017575
AMCG00017584 mRNA downstream 17421 12506590 ~ 12521063 (+) True AMCG00017584
AMCG00017586 mRNA downstream 57200 12546369 ~ 12565088 (+) True AMCG00017586
AMCG00017592 mRNA downstream 222988 12712157 ~ 12717400 (+) True AMCG00017592
AMCG00017593 mRNA downstream 232072 12721241 ~ 12727616 (+) True AMCG00017593
AMCG00017596 mRNA downstream 375207 12864376 ~ 12865629 (+) True AMCG00017596
TU114078 other upstream 592449 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 2889668 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 3719167 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 3783542 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 4340094 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 1547707 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 2588156 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 2623441 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 3377862 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 3645856 16135025 ~ 16135316 (+) True G92130

Expression Profile