RNA id: AMCG00017588


Basic Information

Item Value
RNA id AMCG00017588
length 2128
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00017588
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12704458 ~ 12710164 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTATCGGTGTGCTTTTCCATCGTACTTGTCTTCAGTATGGTTTTCTTCACCTGCAATGCATGTGGGGAGTCTCTGAAGAAGGGCCAAGTCGACAAGCATGTAAGTGTGTGTAGGAGCTGCCAGAGCTTGTCCTGCATCGACTGTGGTAAAGACTTCTGGGGTGATGATTACAAAAATCATGTCAAGTGCATAACTGAAGATCAAAAGTATGGAGGGAAAGGCTATGAAGCCAAGAGTAACAAAGGAGACGTGAAGCAGCAGCAATGGATTCAGAAAATTCACGAAGCAATGAATAAACCAGGGATAAGTCCAAAATTACGTGAGGTACTGCAGCAGGTGAGCTCCTACGACAATGTTCCtcggaaaaaaggaaaattccAGAACTGGATGAAGAACAGTTTAAAGCTCAATAACCAAGCTTTGCAAGACCAGGTGTGGGACATTTTTTCAACAGCAACAAGCAGTGAGCCCAGCCAGCCCCAGAAGTGCACAAACAGTCAGCCAGATgagagtgaagaaaaaaacCAGGCCTCTGTGACCGAGGAGAAGGCCCCgtcaaaagagaagaaaaagaacaagcGGGAGCGTAAAGAAGAAaggcagaaaaagaacaagaaagagaagaaaacattgagGCTGGAAAGCCAAGAGGAAGCTGAAGATGATGACCAGGTCCCAATGCATGAGGCTAAAGGCGAGAATGGGACAGAAAATGGCCATGGCCTCGAAGATGTGACAACGAGCAAGAAGTGCAAGAAACGTAAACACGACAATTTGGAAGAAAATCCCAAATCCAAGCAGATGAAGGTTGAaatggatgatgatgatgatgtagaTGATGCcgagggcgagagagagaacaaagGCAAATTCAATTGGAAAGGAActattaaatctattttaaaacaatcccCGGAAGAGggcatttcaataaaaaagcTCAGAAAGAAGgTTCTAGCAGCGTATTATACCGTTAGTGGGGAAGATAATCACAAAACTGAGGAAGCGCTCTTCTCCCTGTTCAACAAGAAAATCCACTGCAATCCCAAGTTTAgagttttgaaagaaaaagtcaaGCTTGTGCAGTAATGTTTCCGCTTCCTCTCGGCAGTCTTTTGTTACACATTCAGAATGATTACACATCTTTGATATTTCCTGTTAACCAAAATTGGAACACTTGTAAATGAATCTTCTGAGATATAACGCGcagccttttttaaataaatgttctttagCAAAATACTTAGTTATGAAATCCGCTGTATGTAcgtagtttttattattttaaaatatgcagaaaGCAGCATTAATTATTCCGCTATACTAATTTCCCATTGTTTTTTGAATTTTTAATTAGACATTTACTTTTCCACAGATTTGTTTGAATAAACGATTTAATCAGGGCGTATTGTTCCAGTGTCCGAATAGGATGATATTAAGAGCTGAATCTGAGGATTGGATGAACTCCGATGCACTGATGACTAGAAATGAAACTGATTAAACAGGGACTATCAGACTAAGGTGGAATGTGAGAAGCTTACAGAATAGAAGTAGGTCCTACAAGGGCAGACACACGGTACACAACCTCTCTGCCAATATTTTCTTTCCCACTGAATCTAGGTTATCTTTGTCATTAGTCCTTGTATGtaggcttctctctctctctctctctctctctctctctctctctcatatatatatatataaaataatgcacattcttgcttttacatttggaTTGTATAGGTGTTTTttgaaaattgttttaatttgggtAAAGGAGAAGACtagacaaaaaatatacattactttGTCATAACTAAACAGGAAATGCTTTGCctttaatattttctgaatgAGGAAGGATTTGAGTGAGTTTGAAACTTAAGATAACATTTCTTCACGGATTAATTGTTTAAGGACTAAGTAAACTCAGGGTGAATTTGACACTTGCGTGGAGCAGACTAATGCACATTCCACGGCACCCTGAACACTGTGCAGTTGGCTGGGTACACAGAAGCCCTATACAGGTACATTTGTGAATCCAGAGCAAGACTCTGGTGTTAAAGTCTGATTGAATTTTAATGCTGTCTGATTCCTTGGGAGAATAAATAGCCTgttacccac

Function

GO: NA

KEGG:

id description
K15263 LYER; cell growth-regulating nucleolar protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 48125 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 183244 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 183244 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 195315 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 204511 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 1333957 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 2049917 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 2089926 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 2214229 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 2344299 15054463 ~ 15054684 (-) True G92049
AMCG00017591 mRNA downstream 15943 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017589 mRNA downstream 26775 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017587 mRNA downstream 38623 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017582 mRNA downstream 382088 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017579 mRNA downstream 607189 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017590 mRNA upstream 19867 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017594 mRNA upstream 180028 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017598 mRNA upstream 251822 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017602 mRNA upstream 369967 13080131 ~ 13105870 (-) True AMCG00017602
AMCG00017605 mRNA upstream 396841 13107005 ~ 13142072 (-) True AMCG00017605
TU113928 other downstream 2207354 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3948551 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4189503 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4707863 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4871866 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1722994 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3156783 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3320238 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3320292 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4758441 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile