RNA id: AMCG00017590


Basic Information

Item Value
RNA id AMCG00017590
length 636
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00017590
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12730031 ~ 12739099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGATAACGAGAGAGATCAGATTGACCAGGACGCACAGACGTTCATGAGAACATGCTCGGATGCCATCAAATATCTGAGATCAGAAGGTGTGTGCAAGCTGTACTCTGAGCAGCGAGCAATCAGGGTCAAACGAGTGGTGGATAAGAAGAGACTTTCAAGACTTGAACCAGAGCAACACCGCAAGCTGGTACCTTCTCTTCCCGAGAGCAGCGTTCATACAGAGCAGTCGGAGGAGAAGGTTTTAAAAGAGACCAGTGGTGataaaaattTTGAACAAGAGAATCAAAGGCTTGTGAGTGAGATGAACAGCCTTGTTGATGAAGTGAGACAAATTGAAGGCAAAGTTGTGGAAATTTCTAGACTCCAGGAGATATTTGCTGAGAAAGTTTTGCATCAgGAGGCGGAGATAGATAATATTCATCAGCTAGTGGTAGGCACAACAGAAAACGTCAAGGAAGGCAATGAAGACATTAGAGAGTATCTCAAACACATGCTGCACTTGAGGAAtaagctttgttttgtgtttgacttTCAGGCCATTAAAAACAACGCTGGGTTTCGAGTCTGGATCCTCTTCTTCCTTGTGATGTGTTCCTTTTCGTTGCTTTTCTTGGACTGGTACGACAGCTAA

Function

GO: NA

KEGG:

id description
K08492 STX18; syntaxin 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 73698 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 208817 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 208817 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 220888 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 230084 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 1305022 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 2020982 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 2060991 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 2185294 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 2315364 15054463 ~ 15054684 (-) True G92049
AMCG00017588 mRNA downstream 19867 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017591 mRNA downstream 41516 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017589 mRNA downstream 52348 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017587 mRNA downstream 64196 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017582 mRNA downstream 407661 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017594 mRNA upstream 151093 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017598 mRNA upstream 222887 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017602 mRNA upstream 341032 13080131 ~ 13105870 (-) True AMCG00017602
AMCG00017605 mRNA upstream 367906 13107005 ~ 13142072 (-) True AMCG00017605
AMCG00017604 mRNA upstream 405032 13144131 ~ 13179970 (-) True AMCG00017604
TU113928 other downstream 2232927 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3974124 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4215076 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4733436 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4897439 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1694059 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3127848 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3291303 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3291357 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4729506 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile