RNA id: AMCG00017591


Basic Information

Item Value
RNA id AMCG00017591
length 793
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00017591
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12682426 ~ 12688515 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGGCAGCCTGGCAGGACGCTAGACAAGGAACATGGCGGATTTGTTGGAAAAAGCTGAGTTTCAAGCTCTGCGAAACAGGTTTAAACAAGATGCAGAGTTGCTTTTGCGTGGAAATTCATTCACGACCGACAATGACCACACTTCAGAAgataaagagaagaaagaaaagccaTTGCCTCGCTTTAATCGTCACTCACTTTTCTGGATTGTGGCTTCAATTGGATTGACGTACTACACTGACTTCTTTGTAGTCATTAAAGAGGATGCACACATTAAAAGTTGGTGGTTTAATATTGGCATCATATTGCTGGCTGTAAGTGTAATAATGGCTTTTTTCTGCATAATTTACCTGGAGTGGTTCCGTGGAATTCGGGATTATGACAAGGAATACCCAGCCATTGCACCCATCACAACTGCTGCATTTATTGCTGCATCAGCAAGttttaatatagCTTTGTGGCCGGTCTGGTCTTTCTTCACGCCCGTAATCCTTTTTACTCAGTTCATGGGTGTTGTAATGTTCATCTCCCTCCTGGGATAAAGACTGAAAGGACTTCTTTGAATGATGTACttccacatacatttaaatgacattgAAGTTGACTTCAATAAtaagtctgttttttgtttttgtaatgaaattTTTTTGTAAGTTAATATTTGGTAACCTAACACTaggtttgctgttttttgtttgcttaccAACTTGTCTTGAGACAGAAAATTCCATTGGGATatgtttgtattactttaattataataaattaatctaaactGACTCAtatgttat

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 26093 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 161212 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 161212 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 173283 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 182479 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 1355606 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 2071566 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 2111575 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 2235878 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 2365948 15054463 ~ 15054684 (-) True G92049
AMCG00017589 mRNA downstream 4743 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017587 mRNA downstream 16591 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017582 mRNA downstream 360056 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017579 mRNA downstream 585157 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017565 mRNA downstream 708742 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017588 mRNA upstream 15943 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017590 mRNA upstream 41516 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017594 mRNA upstream 201677 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017598 mRNA upstream 273471 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017602 mRNA upstream 391616 13080131 ~ 13105870 (-) True AMCG00017602
TU113928 other downstream 2185322 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3926519 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4167471 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4685831 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4849834 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1744643 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3178432 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3341887 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3341941 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4780090 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile