RNA id: AMCG00017598


Basic Information

Item Value
RNA id AMCG00017598
length 3183
RNA type mRNA
GC content 0.47
exon number 19
gene id AMCG00017598
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12961986 ~ 13061226 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGTTCATGCCGTGCTCACAGTGTTGGGCATCGCATCCCTCTATGGGCCAGCGCCATCCAGAGCAGAGGGGGGATGCCAGCCTTGCTTGTCTGAGTCCAGTCCTGCACAGATTCGAAGTCTGACGAAAGCTTACAGTTTTGGACTCACATTTCATAAATGTGCAcagAATGATATTAACTTGTTTGGTCCTTTGGTTGCAAATTTTACTCTGAGACTGAATTCAACGGAGAAGAGAAACAGAAGTGAAGTTAATGGAGAAACCAACCATGAGCTTGCTATATGTAACATAAATGAGACATCCAAAGAAGAGGCAGCTTTTGAAGACAAGATTGTTGACATTATGGTGTTGGAAGATCCTCAGAACATGTATCAGGCCTTAGAAAATTTGGATATGTCAAACCTGCTGCGAGCTGCAGCCAGTTTAGAAAGCTACCGAGTCCAGGTTTACAAAGATGTCATTGCCAAGCTTCTGAGGAATCTGAAGATTAATGGTGATGTCTCCGCACTGGCTGAGAAGAGGCTGACCAGCGTGCTGAACGGGCAGCTGATGGGCATGGAGGGCAAGCTGAAGGAGGAGCATGTGGCGCGGATGGCAGCGCTGGCGGCTCAGTGTAACCTGGAGACTCGAGAGGAAATGGAGGCCGAGCACAGGAGGGTGACTGCAGAGAAGGCGCAAGCGGAGCACCTGTTTCAACACATGGATCAACAGGCAGTATTGGAATGTAGTGTCCTGCTGGACAAACTCCACAAACTAGACCATAGCCATCTGCAGCGCTGTCTCCTGGTCAGACACGAGGAGGCCTCTGCAAAGGTCCAGCGTCAGATCGTGGTTTGCCGGAGAGTGGAGCtccataaaatattttttgaagagCTGGAAGAAGCAACAAGGATGGGGGAACTCGAAAAGAATGTGGCCAACGGATTATTGCACGCCTATTTCGTGAGCCAGGATCAGCTTGAGGAGGTTTTGGACGTCTTCCTGGCCAACCAGAGGAACGTTCTCGGGGAGAGACATGCTCAGAGGCAGTTTCTAGTGCATAGCCTTCAGAGCTTGAAAAGTTTGATATGTGACGTCTTCACTAAAACATCTGGTCAGATGGAGGGCTGGTTCCAAGAGCTGAAAAAtgaagGCTATGTAACAGAGGAACAAGTGGACTTACTTTTAGAAAAAGCCAAAAAGGAACTACTTCATGTGAAGCAAAATTTAGATGAGATTTTGAACAGAGAGAAGAATGCCTTACACTGCAGCCTCATCAAGAAGAGGAGAACCCTAATTTCTGACAAGcTTAAAGAGcataaacaaaagcagaagGATCTTTCTGCTACTTCAAAGACTTCAGATGCAAACCTGGATCTAACTCACTACCTGAACTGCTGGCAAAACCTTTTGACCTCCCAGTGTTTAGAACTAGGAGAACTCATTAATAACCTGGATGAGGAAGGAGCTGCTGACATCCGGAAAGTCACCATGCGCCTCATCCAAAGTGCCATGAGTGACATCAAGGCCATCCAGTCCAATATGGCCCAAACGTTGACTGGTTTGGGAGCTCCGAGGTACGCGCTGCAGCACGCTGGACTGACACACGAACTGGTGTCCAGTGCTCTCACTGAAGTCCAGGAGAGGCTCCACATAGAAGGGAAAATGGCAGTGAAAACCCTCCAGAGGACCAGGGATTCACTCCAGGAGCAGCTGGGGTTGGAGGTCCAGGAACAGCAGGTCTTGAGGCACAGAGGAAGAACAGTGTTTCAAAATCTGTGTGCAGCTCAGCTTGCCTTGTCTGATGACgagttattaaaaatgaagctggAGTTTCAAAACTGTCTTTCAAGGATGGACAATTGCTTGGTTCTGCCGAGGGCTCTGGCAAGATCCCGGCTGCAGGCCTACTTGTCAGAGTGGAGGAAAGCAATGCTAATGAAGATGGAACATAGCTATATTACCCAGCAGGACAAACCGGTCCTGGTGGAGATGCGCTACGAAAGAGAGGATCTTCTGAAAGCCCAGGAGGACCGACTGGCAGTGCACATAGCCTCTTTACAGTTTCAAAAAGCTGAAAGGAGAGCGAAGACCCTGGAGGCATATTCTGCCATTCTCAATCTGCAGACAGTGCTGGTGGAGGAACTACGAATATCAGGAGCAATGGCAAGCCCTGAAATAGCACAGGCAATCCAGAACCACAGCCATGGATTAGAAGATGCGGAGAGTGTGCTCCACAAGGAGCTGGCTGAATGGGATGCTTTAATAATGGAGCACAGCTTGACCTCAGAAACTGTTGCACCTTCAGCTGAAATCTATAAAATAGAGGAGGACTGTCGCATAGCTGTCAGTTTACAGCAATCTCTCAACAAGTGTCAGCAAGTGATAGGGGCTCAAAGAAAAAGactgAGTGACGACGACACGAGATGTCAGATAATGGAAGATTTGAAAGAGAAACTAGAGTTTAAGAGAATCCATATACATTTTGATCAGGATCTTGAGTTTGCTGCTAATTTGATAAAACAGTGCCAGATTTCAGCCAACATTTTACTTGAAGTGTTGCACTTGTTGCTCCCCACATCTTCAGAATCTGACTTGATTTCCTTAGTTGATGCTCTGTGCCCTAAGACATCTCTTCCACTGACTGGAAATGAGAAAGTCAATGGgtggGCTGAAGGATCGAGAAAATCACTTCTTTCCAAACTAAGAGAAGACATCATCTATAGACATTTGGCACCTGCTCCACTGGTAACTGGGGAGGAGAGAAGTCTTGTCcaggaaaatgcagaaaatcagTGCCCGTCTCCAGCTGCAGAAATCTTGGACCTTCCTGACACAGGAgagaaagtgtttgtttttcgcagtgaaacagaacagaaagacTCTTCAGACAcagtttgtaaaatgaaaaagaaaaagaggaactTCCTGAACTTCAAAAAGGCAGCGCTTGTCAGCACAGCCAAGATATCaacatgtgttttttcatttcagttttgtgtgttAAATAGCCTTCCACGTATTTTCCTGTATTTCCCAGaAATGGAAGGGATTGTTGCGATCGTTTCTGATATCTCAGTGGGAAAAGATCCGTCCAACGTGTTCCTGACCTTTCTCAGCAGTGACACCATGCCCTTAGACCAGGTAGAGGAGAAGTGCACGCGCTCAGCTCTGAACATGTTGATGATGTCCTCGACCGCG

Function

GO: NA

KEGG:

id description
K19608 EVC2; ellis van creveld syndrome protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 305653 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 440772 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 440772 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 452843 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 462039 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 982895 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1698855 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1738864 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1863167 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1993237 15054463 ~ 15054684 (-) True G92049
AMCG00017594 mRNA downstream 69426 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017590 mRNA downstream 222887 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017588 mRNA downstream 251822 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017591 mRNA downstream 273471 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017589 mRNA downstream 284303 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017602 mRNA upstream 18905 13080131 ~ 13105870 (-) True AMCG00017602
AMCG00017605 mRNA upstream 45779 13107005 ~ 13142072 (-) True AMCG00017605
AMCG00017604 mRNA upstream 82905 13144131 ~ 13179970 (-) True AMCG00017604
AMCG00017606 mRNA upstream 155073 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017607 mRNA upstream 175909 13237135 ~ 13242580 (-) True AMCG00017607
TU113928 other downstream 2464882 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4206079 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4447031 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4965391 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5129394 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1371932 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2805721 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2969176 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2969230 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4407379 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile