RNA id: TU114374


Basic Information

Item Value
RNA id TU114374
length 1788
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00017600
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13196895 ~ 13259760 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacagtattagtatggtgttcctaataatcctttaggtgaatatatatacgtatacaaagtcacacacacacaggcatcgattactatactatactatacattttcagtgttgatCTTGTGGTTTGGAACGATTGTAGTAGCTGCTATACCAAAAATGCTGCAGGACATTAGTAAGAAATATATCTGAAGTGTGTATCAGACATGTTCATATATTTGGGCAGTCAAGTAGCTTTAGGCTTAGCTCTTTGTACCGAGATTATTTTTCAGGTAATAGATTATGCCTTAATTTATCCAAGAAATAGCTTTTTCAGCATTGAGCTTTGTACATAGAGGctgatattaaacaaaacataagcaTCTCCACggagtttattttaattgaaaaagaaacCTCAACTCCAATATTGACAATTTCCAGGGTGCAGGCAGTTGATTTCCCAGAATACCACTTTTCTAATAAACACTAATGTGGATATCTCATTTAAACTCGGGCGTTCTCAGCTATAGGAAAATTAGAGTTACGAGCAATTGTAAAGGTATCCTACCCTTCCAAATCATGTTGACTAGCTTGTTATGAGCTTGTTATGCTTTAATTAAGATGCTGGTCGTGTATTAAGTCAGATTGTGGCCTTCGGGAGAGATTGCTATGACTCTTCTTTGGTAGTTTTTAAACAATCAGCGGTTGACAGACACTGTGGACTTTGTACTGTGTGCATCCAGAGGACCTGTACTACTCTGATaggtgaaatgttttaatttaaattaatcttaaaacaaTCTTTTAGCAATATGTGGTTTTAGAAAGCTTGCACTTTAAGTATTGTGCTTAATATCTCAAGCAATTCAATCAAACTGATATCACAAGGTGCATTCACTGTTCAACTGCAAATATTTAAGAATAGTGACATTAAATTATTTGACGTTATTCACTGGCTGCTATATAGAGGTACATGAATTACTAAATACCACTAAATATCAAAAATAACATGtctacacatttcctgcactaACCATCATTGCTTGGTTagtgaaattattttgttttagattttaattttattataaaacaaaagtacttTCTAAGCATGTTAGAAAAATCCTGAACTctctaaaaatgttatatttgtgtattgccaagatgtaaaaaaacatgAGAGCTGAAGTGCCTTGGCTAGCATTGCCTTTTAGTGTTCCCCAGTGGGTTTCTAAATTGTGATCAGCGGGAGGATTGTGGCAGAACTGGGACAGACATGTCACTGCCAAGGGGACTCCAGAGCAAACAAGTCTCAGATCGTATGTATTCACATTCAAGGACAGGTGAAGTATCCCGACTGCCTGGAAATAACTGGTCTCcttttaacatgtttgtttgcaAATTGGTCCCCTgctataaatgaaaaaaatttaGTGTTGAACTctgcatttaaaactttttttaatactcTCATGTAACAATGctctaaaacaaattaaaatgttgtaaaaagaGAAAGCAGCACGGACTTCAAATTGGAAAAGTCATGGTCATAGATAAAATATTGAGAAGGCTGTTATAAAATGACGTGTGTGTATGATGTGGGTTCGGTCATATCTTTaagtttttgctgtttttctgaacacaccattgaaaaacattgaaaaagtaatttaatccAATGTATACGACTAATAGAACTATCTACAGTGCTTAAGTGCCTCCACACCGCTGTCCTGCAAATGTCTGTCTTTGGACTGCGTCATCACTGACCGTTATTACACTGCTGTAAATCAACACTGTGATCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114365 lncRNA upstream 56017 13140662 ~ 13140878 (+) True G91683
TU114318 lncRNA upstream 136249 13059856 ~ 13060646 (+) True G91649
TU114286 lncRNA upstream 305539 12865187 ~ 12891356 (+) False G91619
TU114285 lncRNA upstream 305539 12889640 ~ 12891356 (+) True G91619
TU114261 lncRNA upstream 486179 12707310 ~ 12710716 (+) True G91597
TU114421 lncRNA downstream 263069 13522641 ~ 13526149 (+) True G91726
TU114422 lncRNA downstream 269209 13528781 ~ 13533210 (+) True G91727
TU114429 lncRNA downstream 566952 13826524 ~ 13830813 (+) False AMCG00017615
TU114438 lncRNA downstream 598645 13858217 ~ 13913757 (+) True G91740
TU114570 lncRNA downstream 784512 14044084 ~ 14044528 (+) True G91849
AMCG00017595 mRNA upstream 118868 13061741 ~ 13078027 (+) True AMCG00017595
AMCG00017597 mRNA upstream 226864 12951332 ~ 12970031 (+) True AMCG00017597
AMCG00017599 mRNA upstream 265059 12924850 ~ 12931836 (+) True AMCG00017599
AMCG00017596 mRNA upstream 331266 12864376 ~ 12865629 (+) True AMCG00017596
AMCG00017593 mRNA upstream 469279 12721241 ~ 12727616 (+) True AMCG00017593
AMCG00017610 mRNA downstream 112043 13371615 ~ 13383451 (+) True AMCG00017610
AMCG00017608 mRNA downstream 160224 13419796 ~ 13422446 (+) True AMCG00017608
AMCG00017609 mRNA downstream 168576 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017611 mRNA downstream 186929 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017613 mRNA downstream 242375 13501947 ~ 13518167 (+) True AMCG00017613
TU114078 other upstream 1316396 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 3613615 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 4443114 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 4507489 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5064041 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 777304 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1817753 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1853038 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 2607459 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2875453 16135025 ~ 16135316 (+) True G92130

Expression Profile