RNA id: AMCG00017602


Basic Information

Item Value
RNA id AMCG00017602
length 3833
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00017602
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13080131 ~ 13105870 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAATCTGCGCCACAAGAACGCGGCTCAAAAACAGTGATCACCGAGGCAACCAGCAGCCGATGCGCATCTCTCCGGACAGAAACGCAGACGTGAAGGATTTAGTCACCCCGGCGTGGAAATGCAGCCAGTCACCATCTGAGCCCAGCCTGATGCGGAGCAGACGAAGAGCACGGCGCAGCACGACGTCCATCACTGCCGCGGCGCTGGAGAGGTGCCTCCGCTACAGCGCACTGACTTGCAACTTTGTGCTCCGtgtttcattacaaaataacCATTTTGAATAGCCCGTGGACACGCGTTCGCATGCATTGAGGCATCCGCTTTACTTGGCGGTACAGTACAGCCGGGCAGCTGCAAGGTGTTGATTTGGTTTCTCTGTACCACTGGACTCCCCATCGCATtgcgtgtgtgtgctgtgatgCTCGGCGCGACGCGTTGCTTTTGAACTGGCCTGTGGTGAATGAGTGGCGCACCGCGGGCTTTGTTCCTGCTCGCTGCCGCATCCTGCTCACTCCAGACCGGGGGAGAGGGGTCGCTCTGCCGGTGTCTGCTGGGGGGGTCGTGCATCAGCCTAGTCCTGTGCATTTGAGCACGTTGGCAATTTCCTGCAGCACGCATCATCACAGACGGTAAGAGGGGAGATCAGACGGGGACGCAGACTGACACCTCCTCTCATAGTTCAGCTCAGGAGCGCTGCAGTCCTTTGCACCGTCAAGGTCGACTAGGGATCCGACTGCCGCGCATTGCGTCTGGGTCTGGGGTGCGGGGGGCAGTCGCCGGAGGAGCTGGATTGGTCTGGGGGAGATTCACATTACCGCATTGCTTATTTCCATTAATGCCCAGCGCTTCCTGAGCCGCCCGGACCCCCCACTCCCCTCGCCCCTGCTAGTCGACTCATTGGGGGATGGCAGACCGCGGTAGGAACTGGAATAAAGAGGATGACCTGCCCGTTTACCTGGCCCGACCCGGCACCACGGCGCAGACCCCGCGGCAGAAATCCTGGGGCATGTTCGCCTCCGTGGAAGGGGCCTACGAGAACAAGACCATCGATTTTGACTCGTACAGCGTGGGGAAAAAGGGATGCCGGACCCCCAGGAGCGGGAGCCGGGAGATGCTGGACGGGGACCATTTCAGCGAGACGGCCAGTGATGTGAGCGAGGTGTCCGGGTCCATCATGAGCTCCCCCAGCGACCGGGACGACAAGACCCCGGGGGTGGAGATTAAATACCCATCCGGCAAGGAGTACCTGCAGGGACAGGAGAATGGAAAGCTGAGAATGTCCGGGTACCAGGGAAAGAAGAGCATCCCGCGCATCACGAGTGACCGTCTGCTTATTAAAGGTGGAAGAGTCATCAATGACGATCAGTCTTTCTTTGCAGACATCTATCTAGAAGATGGGCTGATTAAACAGATAGGGGAGAACCTGATTGTCCCAGGTGGGGTGAAGATTATAGAGGCCAATGGACGCATGGTTCTCCCAGGAGGCATTGATGTGAACACCTGCTTGCAGAAGCCTTATCTCGGCACCAAACCTGTAGATGACTTTTACCAAGGGACCCAGGCAGCTCTGGCAGGAGGAACCACCATGATCACGGCCGACAACAAGTCTTGCTGTGACTACTCCCTCCATGTGGACATCCCCCACTGGCACGAAGGAGTGAAGGAAGAGTTGGAAGTGCTGGTGCAAGAAAAGGgAATTAACTCCTTCCAAGTGTACATGGCATACAAAGATGTATTTCAGATGACAGACAGCCAGCTCTATGAAGCTTTCACCTTCCTGAAGGGACTGGGGGCTGTGGTCCTGGTACATGCTGAAAATGGAGACTTGATCGCTCAGGAACAAAACAAGATCCTCGGCATGGGAATAACCGGGCCAGAGGGACATGCGCTGAGCCGTCCTGAAGAGGCAAGGATTTTGAAGACTTCCAAATGtctcCTGGAGTCTGAGGCGGTTTTCCGTGCCATTACATTAGGAAACCGTGTCAACTGTCCGATATACATTTCCAAGGTGATGAGCAAGAGTGCTGCGGACATCATCGCTCAGGCCAAGAAGAAAGGATCTGTTGTATTTGGAGAGCCAATAACTGCGAGCCTGGGCACAGACGGCTCTCACTACTGGAGTAAGAACTGGGCCAAAGCTGCGTCTTTTGTGACATCCCCACCTTTGAGTCCTGACACTACGACACCAGACCACCTCAACTCACTCTTGGCTTGTGGGGATCTACAGGTGGTGGGCAGTGCGCACTGTGCTTATAGCACGTCCCAGAAAGCCATTGGGAAGGACAACTTCACCCTGATTCCTGAGGGGACGAATGGTGTTGAGGAGCGGATGGCTGTTGTGTGGGACAAGGGAGTAGCTGTAGGTAAAATGGATGAGAACCAGTTCGTGGCTGTAACCAGCACCAATGCCGCCAAAATCTTTAATCTGTATCCAAGGAAAGGGAGGATAGCTGTGGGATCTGATGCTGATATTGTCATCTGGGATCCGGACAGAATGAAGACTTTTTCTGCTAAAATGCAAAAATCGGCACTGGAGTACAACATCTTTGAAGGGATGGAGTGTCGCGGGGTTCCCTTGGTTGTAATCAGCCAGGGGAAAATAGTGTGCGAGGATGGGAATTTGCACGTCCACCAGGGAATGGGCCGTTTCATCCCTCGGAAGCCTTTCCCGGAGTATGTCTTCCAGCGCATCAAGATGAGGAACAAGGCGATGGGGATGCAAGGCGTGTCTAGGGGCATGTACGACGGACCTGTGCACGATGTGCCTGCCACTCCCAAGTACATCACGCCTGCGCCATCGGCAAAGTCTTCTCCTGCCAAGAACCAGCCTCCACCAATCAGGAACCTCCACCAGTCCAACTTCAGCCTATCAGGTTCCCAGGTTGATGACAACATTCCCAGGCGCTCCGGCCACCGCATCGTGGCGCCCCCTGGCGGCCGCTCAAACATCACCAGTCTTGGTTGAACTGTCGAACTTGAGGATTGTGACTTTACAATGGATCAGTGAGGGAGATTGTTCAGTTCCTTTGTATCTCATTGTTCTCGAGTCCTCCGATTCTCCGGTATTTTTGAGAAAATGAAGTGTGTTTGTCTCATAGGATGAGGTAACCTTTGTGTGATGTAATTGCTTGAACATGACGGCCTCACCATTGTAACTTATGCCATAGTCAACTCAAGCATGGTGCTTCCATTGCCCTTTTAGTGGATGAAAAAGTATATCAGTATTGTTTTGTAACTGGGAATTGGTACTTTGCACTATTTCAGTGTTTAGATAGGTAGTTGCATGTTGCTACACATTTTGAtgttgagattttgttttttgccaagATATAACCTAGAAACACACCTCATGCACTGCTTCCAAGTGCAGACTTAACACAACTTGCCACATACGACACATTCATGGTGTGTTCCACATGAACGTCTTATTTTCTTTACGAAAAATGTAGTTCTGATAGGTATAGTATCAGTCAGCAGCTAAGAACAAGGGAACTTTATCCAAGTATACCTTACTAGGAATGATGCAACGTTTAAAGCAATCACAGGCATATGCAGATATTTTAGCATTTAGTCTTGCGTGTACTGAAGCACTCTCTTTAAAGAAGGACTGTATTACACACCACTTGCTATTTCGATTAAAATGGTACAGAGCGCAAGAGTCTCTCCCTCTTCGTAATGGTACCTCCTCACAATCACCTTGAGTTGAAACGTAGTATGTCCCACTTCCTTTTTGTATCTATTTCATTATGTCCACAAACATTTTTACTTAacttgtttaattattgttgtcTGGTGATTTATGATTAATACTTCAtcattgtgaattaaaaa

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 423798 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 558917 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 558917 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 570988 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 580184 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 938251 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1654211 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1694220 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1818523 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1948593 15054463 ~ 15054684 (-) True G92049
AMCG00017598 mRNA downstream 18905 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017594 mRNA downstream 187571 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017590 mRNA downstream 341032 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017588 mRNA downstream 369967 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017591 mRNA downstream 391616 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017605 mRNA upstream 1135 13107005 ~ 13142072 (-) True AMCG00017605
AMCG00017604 mRNA upstream 38261 13144131 ~ 13179970 (-) True AMCG00017604
AMCG00017606 mRNA upstream 110429 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017607 mRNA upstream 131265 13237135 ~ 13242580 (-) True AMCG00017607
AMCG00017601 mRNA upstream 158361 13264231 ~ 13273833 (-) True AMCG00017601
TU113928 other downstream 2583027 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4324224 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4565176 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5083536 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5247539 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1327288 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2761077 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2924532 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2924586 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4362735 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile