RNA id: AMCG00017603


Basic Information

Item Value
RNA id AMCG00017603
length 789
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00017603
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13285773 ~ 13304335 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATATCATTTCCACAGTTGAGTTCAACCAGACGGGGGAACTGCTGGCGACTGGGGACAAGGGAGGCCGTGTTGTTATATTCCAGAGGGAACCTGAGAGTAAAAATGAGCCTTGCTGCCAGGGAGAGTACAATGTTTACAGCACCTTCCAGAGCCATGAGCCCGAGTTCGATTACCTGAAGAGCCTGGAAATCGAGGAGAAGATCAACAAAATCAGATGGCTGCCTCAACAGAATGCTGCCCACTTCCTTCTGTCAACCAATGataaaacaattaaattatggAAAGTTAGCGAAAGAGATAAGAGACCGGAAGGGTACAACCTGAAAGATGAAGAAGGAAGGATGAAAGATCTTTCAACGGTGACATCTCTACAGGTGCCAGTCCTGAAACCCATGGACCTGATGGTAGAGGTGAGCCCACGAAGGATCTTTGCCAATGCTCACACCTACCATGTGAACTCCATCTCCGTCAACAGTGACTGTGAGACCTACATGTCTGCTGATGACCTCAGGATTAATCTCTGGCACCTGGCCATCACGGACAGGAGCTTCAACATTGTTGACATCAAACCTGCCAACATGGAGGAGTTGACGGAGGTCATCACGGCCGCTGAGTTCCACCCTCACCACTGTAACCTGTTTGTTTACAGCAGCAGTAAAGGGACGCTCCGTCTGTGTGACATGAGGGCCTCGGCTCTTTGTGACAAGCACTCCAAACGTAAGCCACTGTACCGCACAGGGCAGTCCCCAGCCCAAGCCCAGttgtttgctgtgttttcatATAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 629440 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 764559 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 764559 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 776630 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 785826 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 739786 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1455746 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1495755 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1620058 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1750128 15054463 ~ 15054684 (-) True G92049
AMCG00017601 mRNA downstream 11940 13264231 ~ 13273833 (-) True AMCG00017601
AMCG00017607 mRNA downstream 43193 13237135 ~ 13242580 (-) True AMCG00017607
AMCG00017606 mRNA downstream 59770 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017604 mRNA downstream 105803 13144131 ~ 13179970 (-) True AMCG00017604
AMCG00017605 mRNA downstream 143701 13107005 ~ 13142072 (-) True AMCG00017605
AMCG00017614 mRNA upstream 236250 13540585 ~ 13542138 (-) True AMCG00017614
AMCG00017616 mRNA upstream 245090 13549425 ~ 13553804 (-) True AMCG00017616
AMCG00017617 mRNA upstream 527011 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017624 mRNA upstream 606750 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017622 mRNA upstream 705579 14009914 ~ 14017592 (-) True AMCG00017622
TU113928 other downstream 2788669 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4529866 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4770818 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5289178 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5453181 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1128823 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2562612 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2726067 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2726121 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4164270 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile