RNA id: AMCG00017604


Basic Information

Item Value
RNA id AMCG00017604
length 2405
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00017604
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13144131 ~ 13179970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGCGGAAAAGAAGCAGTTGATGATGGCTGAAAGCTCTGTGAAGTACACTTTGCCAAGACCTGGGTTTCTTTGACGGACTACTTTGATTTTGGGCTTTTGAAGGACTGAGAACAACGAACATGTCAAAGAAAAGCCGTGGAAAGGGTGAAAAGCCAGAGGCATTGATGGATGCCTTACAGGCTGCTAATGAGGAACTCAGGACTAAACTGACAGATATTCAGATTGAGCTCCAGCAAGAAAAGAGCAAGGTCAGTAAACTGCGTGAGAAGCTACAGGAGGCAAAGAAGGCCCGGGAGCTGGAGCAGCACAAGCACACTGTCCTGGTGACTGATCTGAAGGCCAAGCTGCATGAGGAGAAGATGAAGGAGCTGCAGGTCGTGCGCGAGGGCCTGATCAAGCAGCACGAGCAGGAACTCGCCCGGGTCTTCAAGATCCGAGACAGCGAGCTGCACCGCCTACAGTCACTGGTCAACGTGCTGCGCGACGGGGCGGCCGACAAGGTGAAGAGCGCCCTGCTGGGGGAGGCCCGAGAGGAGGCCCGCCGCGCCTTTGACTGTGAGCGCACCAAGCTGCAGCAAGAGGTCCTGGAGCTCAAGTCGGCCAAGAAGCAGGTGGATGAGGCCCTGGCCAACGTCATGGACGAGATCAAAGGCAAAGATCGTGTGGTCCTGGCCCTGGAGAAGGAGCTCGGGGTCCAGGCCGGCTATGCCCAGAAGCTGTTGCTGCAGAAGGAGGCCCTGGATGAGCAGCTGGTGCAGGTGAAGGAGGCAGAACGGCATCATGGGAGCCCCAAGAGGGAGCTCCCCCCCACGCTGGGGGACACCACAGACTTCCTCTTGAGCCAGGAGCAGCAGCTGGACGAGAGGGATGTACGGCGCTTCCAGCTGAAGATCGCTGAGCTCAACGCTGTGATCCGCAAGCTGGAGGACAGGAACACACTGCTGGCAGACGAGAGGAACGAGCTGCTGAAACGAGTCCGGGAGGCGGAGAGCCAGATGAAGCCCCTCTTTGAGAAGAACAAGAGGATGTCCAAGAAGAACGAGGACCTCTTGCAGTCCTTGCAGCGCATGGAGGAGAAGCTGAAGAACCTGACGAGGGAGTATGCAGAGATGAAGGAAAAAATCCATTCCCAGACTCAGACTGTTCTGAAGAGACCCAGTTCCCTCAACGATCTTAGCCACACACATGAAGAACAGGAGATAGAGTTCCTCAAGCTACAAGTGGCGGAGCAACAAAGCATGATTGACGACTTGACATTGaggCATGTTGTGGAGACATATTTTGGATTTGATGAAGAGTCCATCGATTCGGAGACTTCCTCTATAACATCCTACAACACAGACCGCACCGACAGGACGCCAGCTACTCCTGAAGAAGACTTGGAAGAAGGCATTTCCCGAGAGGAGTCGGAGCTGCGCTTCAGGCAGCTGACGCGGGAGTACCAGGCTCTGCAGAGGGCCTACGCGCTGCTACAGGAGCAGGTTGGAGGGACTCTGGATGCAGAGCGAGAGGCCCGGACTCGGGAGCAGCTGCAGGCAGATCTAATAAGATGCCAGGGGAAAATTGAGGATCTTGAGAAATCTCTTGCCGAGAGGGGGCAGGACTCCAAATGGGTGGAGGAAAAACAATACCTCATCAGAACCAACCAGGAGCTCTTAGAGAAGATCTCCAGACTGGAGCTGAATGAGAGCCGTCTTAAGACTGAAATGCAGGATGCGAAGGATCAGAATGAACTATTAGAGTTCAGAGTTCTAGAGCTTGAAGAACGGGAGCGCAGGTCTCCAGCATTTAATCTCCATATAGGGGCCTTTTCTGAAAACAGTGGCAGTGCCCTACAGCTACACTGCCATCAGGAGGGCATCAAGgATGTTGTCATTCCTGAGCTAATGAAGAAACTTGATATACTTGGAGATAATGGTAACCTCAGGAATGAAGAACAGGTTGCTGTGATCCAGGCAGGGACAGTCCTGTCTCTTTGTGAAAAGTGgttaaaacaaattgacagcACTGAAGCTGCTCTCACTCAGAAGATGATCGATCTGGAGAATGAGAAGGATCTGTTCAGTAAACAGAAGGGCTACCTGGAGGAGGAACTGGATTACAGGAAACAAGGTCTGGACCAGGCATATATGAAAATCCAGGAGTTGGAGGCCACACTGTATAATGCTCTGCAGCAAGACCCAGGCCACAGAGTGGGTGAATCTTTGACAGAGAGGCAAAAGGAGGAGCTGAGAATAGCGGTGGAAAAACTGAGGAGGCAGATTCTGAGGCAGAGCCGAGAGTTTGACAGTCAGATCTTGCAGGAGCGCACGGAGCTTTTGCAACAGGCACAGCAGAGAATAAGGGAACTGGAGGATAAGATAGAATTCCAGAAAAGACAAATTAAGGAAATAGAAGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 487798 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 622917 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 622917 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 634988 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 644184 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 864151 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1580111 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1620120 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1744423 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1874493 15054463 ~ 15054684 (-) True G92049
AMCG00017605 mRNA downstream 2059 13107005 ~ 13142072 (-) True AMCG00017605
AMCG00017602 mRNA downstream 38261 13080131 ~ 13105870 (-) True AMCG00017602
AMCG00017598 mRNA downstream 82905 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017594 mRNA downstream 251571 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017590 mRNA downstream 405032 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017606 mRNA upstream 36329 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017607 mRNA upstream 57165 13237135 ~ 13242580 (-) True AMCG00017607
AMCG00017601 mRNA upstream 84261 13264231 ~ 13273833 (-) True AMCG00017601
AMCG00017603 mRNA upstream 105803 13285773 ~ 13304335 (-) True AMCG00017603
AMCG00017614 mRNA upstream 360615 13540585 ~ 13542138 (-) True AMCG00017614
TU113928 other downstream 2647027 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4388224 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4629176 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5147536 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5311539 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1253188 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2686977 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2850432 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2850486 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4288635 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015268 False 3288 mRNA 0.50 21 NC_007125.7 17230677 ~ 17306261 (-)
grasscarp (Ctenopharyngodon idella) CI01000116_00770505_00787594.mRNA True 4518 mRNA 0.49 19 CI01000116 769813 ~ 788933 (-)