RNA id: AMCG00017605


Basic Information

Item Value
RNA id AMCG00017605
length 6441
RNA type mRNA
GC content 0.47
exon number 23
gene id AMCG00017605
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13107005 ~ 13142072 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGAACTGCAGCAGAAAACCTTTGAGGAAGAGCATGGCAAGCATATAAAGATAGTGgtcaatgaaattaaatgcagagATGCCATTCGAGTGGAAGTCACAGAGGCAAGTGAAGACCTGATTAAGAAAATTACGGATATGAGTGATTGCAGAGATAAATGTGAAGTTATTATAGATGAACTGACCGAACTATCAGCAGTTGCTTTTAATGAGGTGAAGCTTGACAAACCGTGTATACAACGGGAGAGAGCCATTACTGACCAAGAGATATGGGAGGGagaacaaagagaccaaagatctCAGGTGGAAAACAAACTTCATGGTGAGAGTGAAAGAcgacatacagacacatttcAAGATGAATCTGTGCTTCATGACAAAGACAGTCAATGTGAAATCCATactttttttgttcatgttcCTATTGAGAAAGAGGTTTTCCGAGAAGAAATTGACATAACCGCAGCAGCTGAAATTGACAAGGTTGGTGCTATAATCAGGATGAAAACACGATATTTAGTAGAAATAGAAGAGAGGAACCGAAAAATTGTCGAGCTGACCGGTGCCTTGCAAGATGTTCAGAGGAAAGTTGATCTGCAAATCGAGTGTGAAAGAAAACTTCAGCAAAAGAACAGGATTCTGGAATCCCTCCTGGAAGACATGCAGAGAGGTAGTGCTAAGATTGGACAGGACAAAATTACACGCATGGAGAAGTTACTGAGCATGAGAGAGGAGACGGTACAGGAATTGCAAAGCCGGTTGACTGGCCAGGAACAGCTGCTGAAGGAGATGGAGGAGACGCAGAGGAGACTGTCCTTACGCAACGAAGAGTTGGGCACCAAGCAGCGTGGCCTGAGCGATGAGGTCCACAGGTGGAAGGTGAAATGCTCCAACTATGAACAACATGAGAAGGACAGAAGGGTTGAAATAAAACTACTGAAAGAGAGGATCAATCGGCTGGAGTTTGAAAATTCAAGCTTTGAGTCCAAACTGAGGGACAAAATTGAACAGCTTGAGGCTCTGGGTGCCATGAAGGAGAAAGAAATTGCTAGTCTGTTGTCAGAGCTGAAAAAGTTAACCGTAGACTTTGAAATGAAGGAGGCTGCTTGGCTGAAAGACAGGCAAAACCTTGACATGCAGTTGAGGAAGAAGGTGAGAGAGTTCGAAGCATCTGATGATCATTATAAAAAGCTGAAATGGGATTTTCAGTTGGTGGAGGAAAAAGAGAATAAGCTGAAACAAGTGGAATCCACACTTCAGCAGAGGAATAGAGTGCTAGAAGCTCAGCTCTTAGAGCAGTCTCAGCATGTGACATCTTTAGAGGAAGCAATAACAAGAGAAAGGCAGGCATTGCACACTGACTTGGAGGAGGCAAAGCAAGAGAGGAGTGGCAGTCCACCTGAAGAACCGATGGTCAACCAAGAGTTCCTGCTCCTCTCCCAGAGGGTGAAGGTGCTGGAGAACAGCCTGCGCAACAATGTCAACACATTCTGCGAGTCTGAGGCGGCGCTAAGGAACCGAATTAAAGAACTGGAAATTTCTGAAAAGAATCTCCTGGTCAAGGTGGATGATCTCAGTACCAAGTCAGTGTCCCCCATCGCCCCCCGACAAAGACAAGATGAGAAACTACAGATGCTCAGGGAGGAAATGAGGAGCATGGTATCGGAGAAGGACAAATCAGAGAGAGCTTTGAAGGAGAAAATCCGTCGCTTTCAGAGCCAGATCAAAATGAAGGAAGAAGAGATGAAGAAGCAGTCCGAGTACTTTGAGCACTACAAGCAGAAGGTGCAACAGAAACTAGCCCTGATGAAGGAGCGGGAGCACAGCCTTCAGGGCCAGATCTtcaagatggagagagaggtgaTTGACCTGACGGCCACGGCGGCGCTTCTCAGAACCGAGCTGGAGAGGCAAGACCCCGAAACCGGCGCCTCCGGAAGAGGCCAGGGCCCGGCAGAGTTTGATGCAGAGATCAGGATGACTTATTTCTTTGAAGACAGTGAAAGCCGCATAAAGGGATACATCCACAGCCTGCAGGAGGATTTGAAGAACttgctggagagagaggaagccAGCCACATGGAGAGGAGGGAGCTGAAGGACCGACTACAGGAAGCCGAGGATAATGAGGAGTTTCTCAGCAGGAAGCTGGAGGACTTCCGCTCCCGAATTCATGAACTGAAACTCTCGGAAAGCGGCCTCCTGGAGGAAGTGGAGGAGCTGGCAGAGGAGAATGAGCGCCTCCGCAGAATGATCCCTGAGGTGAGGGAAGAGAGTGATTCCATGGCAGGAGGAAACCCAACCAAGACTGAGTCTGGAAGCCAACAACGTACTGCTCTTGATAGCGATGCTGTGGACTCTTTGAAGTCTAATCAGCTGAATAGGCTGTATAACACCATCACAGAATTCATGgAAGAACAGGACTTAGAGAGCCGACACACACATTTGAAGAGTTCGCTGAAATATCTGAAATCTCAGCTTGAGACTGGTGGTGTTGTGTTCAGAGAGGAGCTGCAGCAGTTGAAATGGGATGCCATTCTGGATCAGTCCAGGAATAAAGCAGTTCAGACCCCTTCAGTGACCGAGTGCATCAAAGAGGCTCTCGCCATTGCCAAATTGATTCCTCAGTCCGGGTGTTCACGTCAGTGTTCGTGTGAAGACCTATTGAGACGGTCTGTATTTCCTTTGCTGGAAAACAACTCCAGGCCCCTTCCAGAGATCATGCAGGCTCTTCGGTGTGGCGATGTAGAGCAGGTCAAGTCAAGCCTCAAAGAACTGGAGACCCAATCAAAGCTAGCCCTGCTGCTTGGTTCATTTGCAGAGCATGAAAGTACAGCTCTTTCTAGACTATGGATTCATAACCATAGCCAAGGGGCAGAAGAGACTAGACATGAAGATGAAAGGTCTCTGTCCAAACATAAGGAGACTATAATTAAGAAAGATGAGATGGAGAGCTCTTTGATCAGTAGAGATGATGCAATACACAAACTGACTGAGATGAATGTCCAACTGCAACAGAAATTAAGTGCGATGGAGAGGCACATGCTGGAGTTTTCTGAGGAAGGAGAAACGGAGAAAAGCGAAAGTGACTTGGAGctggaaacattaaaaaataattggagacaagaaaacaaagtcCTTGGAAAATGCAATGAAGAACTTCTTAATCAGATTTCACATGTCGAAGGGGTTCATGAGTGTCAAATGGCAAAATTGAATGAAGAAATTGTAAAGCATCAGGAGAATATTTCCAAGCTTAAGGAAGGCAATAGCAAATCATCCTGCATAATATCTGAGCTCCAGAAAAAGATGGAAAATGATTCAAATGTGATTCTTGACCTCCAGGAGAACCTCAGAAAGAGTTCTAGGGAGGTCCTAGGCCTCCAGGAAGAGAAAATTGAACTCCGACAGCGTATTTCAATACTGGAACACAAGAGTAAGCTGAACTCTCGTACTGTTTTGGAACTTCAAGCAAAGATTGAAGAGATTTCTGTCCTGAATGTTCAACTAAACAAGAATCTAGAAGAAAGCTCTGAGATTCTCAGGCAGTtacaagaagagaaaaaacagcaacagataTGTATTGCAAAACTAGAAGAAGATAATACCTTGTACTCTAAGACTGTTGAAGAGTTGCAAATAGAAGTAGAACATTTGCTTAACTTAACTGTAAAGCTTAAATATAAAGTGAAAGATGTTTCTGCAGGAAACAAAATCAAGGATTGCTTAGTCCAGCTGGAAActttaactgaaaaaaacagcaatccTGTTTACAATATACATGAGCAACAAGAAGATATCAACAACAGTTCCAAGATAATCCAAGAAGGGAAAGACAACAGTGTCCAGGAGATAGCTCAAATGCAGGAAGCCTGTAAGCCTACTGAGAAGTTTGGGACACACCAAGATAAACCTGAGACCATCTCTAAAAAACTGTCAGATCTGCAGGGTGCAATTGAGCAGCTTGCTGATGAAGTGGTGCATCTTCATGGagagaacaaaataattgaaagagaaCTGGCTGATATGCAGAGCGAGCATGCCAAAATcctgaaagaaagagagagtgcaATTAATACAATCAGGGCCCAAAATAAAGAGCTGTTGGAAAAGGTTGTGAACTTCGAAAATCGTGAGAAGCAATCGATTGCGAGAGAATCTGACCTGAGGGGAGAAATTGACttactaaggaaagaaaatgggaaGCTCCTGAATCGTATCGAAGACCTGAAACTCAATCAAGATGCTGAAGAGAAGAAACATGTAGGAAAACCTCAAAAGGAAAACGAgGCACAGAAGTGGTACCGAGACATGGGTCTAGCTGAGACtaaacgagaggaagccatgAAAAAACTGAGCCAAGCTGTGAATGAGGTGAAAAGAATGAGAGAATCTGTGAAAGAGGCAGAAAGGGTGAAGACCGAGAATGCACGACTACGAAATGAGATAAATGAACTGGAAAAAGGAACAGCTGAACTAGACCGTGTGTGCGGGGGAGTCTTGGAATTGAAGTCCCAGCTCAAAGAACAAACTGATTTGGAGGAAAGCCTACAGGAACAGCTCAGTGCAAAGACCGCGTGTGAGAAAGAGCTGAGAGCACAGAACGTCGCCCTGAAGAACGAGCTCAGTAAAGTAGAGGACTGGAGCGCAGTCGTGCAGGGACTCAAGTCTCAGTATGATGACATCAGACAGCAGGCCaagctggcctgtgtggtccagAAATGCCATGAGCGCCACAGCCTCATCCTTCAGTTGGTGAGGGTGCTGCGCAGGCATGGCTTCATTGACTTCAGGCTGATTGAGGAGGCTGAAGACCTGGTGAATGACACCGCGCTGATGGAGTACTCTAGCACTTTCACTCCTTCACATGGCAACCAATGTAGCAGGAACTGTATTGGTAACAAGCAGCTGTTGATTCTTGCCTGTGATCCAGGGCCGCTGCAGAGCTCTCTATCCAGTGGCAGAGGGAGCCTCCCAGACCTCGATGGGTGTCTCAGCTTCAGGTCCTGTGTAGCTAGAATGGACTTCTCTCCTTCCCCTGACATGCCAAGGACAGTGCTGCCCACTCTACCACTCTCTGCGGGGGAAGCAGTACAGGTCACTGGAGTTCCTGACAGTCATGGGTTGTACCATGCAGAGGTGAAAGGAGAAGTTGGGCTGGTTCCTGCTTGTTTCCTAATAGAAACGGAGGACCTACAGCCAGCGTCCCCCATTCACAATAAGTGTTCCAGTCCAAGACCAAGGTTAACCAGTCCTGAGAGGATCATCAATCTCCATCATCAACTGAAATCACATTGCAGCAATTACCAGGTAGTCTCGTCGGCCACGTCCGATTCCAGCCCCGAGACGGACCACAGTTCGGTCTCGACTCCCTGTCTGGTCCAGGAGGGCACATCCGGCCTCTCACTGTCACAGCAGCAGGAAGAGGTGGCAGATCTGAAGTGCCCCACTCTCTCCAAGTCTCTGGGAGGGGAGGGGCAGGGTCGTCTCAGTGAGCTGAGCAGGAGAAATGTCAGCCGAGACGCTGGAGTCATACTCAATAACGCATGGCTCTCCAGGGATGATGCAAATTGCTCTGCCGCAGCAGCTGCAATGAGGAGCAATTTGTCAGACTTGTCACTTCTGAGGAGCCAGGGGCAGGATGGCAAGGGAATAGTCTCCAATGCCCTGTTTCCAGAAGGCAGATCAATAAGAGCAAAACAAGAACCCCCTTTGCCCGTTGGCTCCGTGGAGATTGTAAAGACTGTGGGCCACAGCAGCCTCATGATTGGCTGGGAAAGACCTCCTCTCGATGAGCTCGGCTGCAGTAACGGCATCTTTGTTTATGGTTACAGGGCTGTGCTGGAAAATGTCGACCTGTCAGTTTCGTTTCAAATCAGTGTCCAGACTCTAGGAGCCAACGGGCTGTTCTCTGAGAAAGTTCATGCTCACTTCCAGAGCCCCATCTCTCCTGCTGGGCCGGAGCTGTCCTCTCCAGACCTCTGGACTCCTCACTCTTATCAGCACAGCGGGCAGCCTtttgttgccATCTACAACTATAGTCCCTTGAAGGACAGCCCCAATATTCACCCAAGTCGAGAGCTGGCGTTCAAAGAAGGGGACCCAGTGTGGGTGTTTGGAAAACCCAGGAGGGATGGCTTCTGTGAGGCTGAAGCTAATGGAAGGCAAGGTCTCGCACCACTTGCATTCCTGGAGGAGGCTAATGTTAGACTGCCGAGTAAGACAAAGGAAAATGCGCCAAGGATGCTGGCTCTCCCTCCAGGGCTCATTGAAACCAGCTGCGTTTCTCCCTCTTCTCAAGTGCCATCAGCTGCCGCCTGTGAAcacacatcaaaccagagaaaGGTCCTGGACTTTACACTGATgaaatgcattcacacagaaaggaaaaaacaaaacacaaatgccttATTTTACAGCTGGAAGCACACAGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 450672 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 585791 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 585791 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 597862 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 607058 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 902049 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1618009 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1658018 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1782321 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1912391 15054463 ~ 15054684 (-) True G92049
AMCG00017602 mRNA downstream 1135 13080131 ~ 13105870 (-) True AMCG00017602
AMCG00017598 mRNA downstream 45779 12961986 ~ 13061226 (-) True AMCG00017598
AMCG00017594 mRNA downstream 214445 12890192 ~ 12892560 (-) True AMCG00017594
AMCG00017590 mRNA downstream 367906 12730031 ~ 12739099 (-) True AMCG00017590
AMCG00017588 mRNA downstream 396841 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017604 mRNA upstream 2059 13144131 ~ 13179970 (-) True AMCG00017604
AMCG00017606 mRNA upstream 74227 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017607 mRNA upstream 95063 13237135 ~ 13242580 (-) True AMCG00017607
AMCG00017601 mRNA upstream 122159 13264231 ~ 13273833 (-) True AMCG00017601
AMCG00017603 mRNA upstream 143701 13285773 ~ 13304335 (-) True AMCG00017603
TU113928 other downstream 2609901 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4351098 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4592050 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5110410 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5274413 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1291086 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2724875 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2888330 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2888384 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4326533 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile