RNA id: AMCG00017611


Basic Information

Item Value
RNA id AMCG00017611
length 4473
RNA type mRNA
GC content 0.38
exon number 9
gene id AMCG00017611
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13446501 ~ 13474811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACTCCTGAGCGGAGCCGCAATGGCGTCGGATGCGTCACCCGTGGAGCGCTGTGACACCCTGGGCTAGAGCGCAGCGGAGCCGGCGAGCCGTGCGGCGCCTGCGTGCGTCGTGTACGTGACGCTGCTGCGGCGGATTCCGGAGCCCGAGCTCGGATCGGCAGCGGGAGAGAACCAGccgctcctcctcctgctctttCTCCCGATTTACTACGTTGAGTAACGGCAGGTAATGCAGGGGAGTGATCCAAAGCTCAACATGAATCTCTTCTGATGGTGTAGCAAACACTATCAGTGTTTTGCCATAACTGGTATCTTTTCATCAGTAAGCTATGCCCGAAGAGTGAAGCTCATCCTTGCTAACAGCAATAAGATAACCTACATGAGGGTCCATGTAGCTCCCCTTATGTTCGTCCTGCTGGAGTAAATTGAATCCAGAGAGGCCCCCCTTAAGTCATCTACCAGAAAATGCTGCATTATTTCACAATGCCGAACACCTAAATTAATGCGTCCAGCCAGTGCCGATTTGGACGGTCCTGCTCCTGAAAGCTTCTCAAGTCCCTTTCCAGGCCCACTACCTGCATCTGAAGCAAGAATGTCTCTTCTCCATGCATTGGGCCCGGTGCAGACCTGGCTGGGACAGGAGCTGGAAAAGTGTGGCATTGATGCAATGATCTACACTCGCTATGTCCTAAGTCTTCTTCTGCATGATAGTTATGACTACGACTTACAGGATCAGAGCTCTGGAATTGAAAGCCTGGTTGAGGAGCTATGCTCCAAACTCAAGGATCTTCAGAATAAACAGaaagAAGAAAAGCAAACTAACAAGAAATCTGACGGATATCAGTCTCCTGAACTTCTTGAATCCCCATCATCTAAAGATCAGGTGGAAATAAAGAGCAAACTGGAGACTAAGTACCGTAACCGGCTGGATTCACACGATGGATTTTCTGCATCACCTGATGTTGAGAAGTTGTCGGAGAGGATGCAGGGAATTTGTATTGCTAACACGAATTTCCAGAGAGCATACCTCGCTGCAGAACTCATTTTCGACCAATTTCTGCCTCAGAACTATCTCCTGGAGGAGGAATTTCCTTTGCTAAATGTAAGTGTGCAGGGAAATCCTGAACACCAGCAGGAGGAGCGCTGGTGGCAGAAACACCTCTGTTCACCATTTGTTTCAGGGTCACAGTGTTCAGATTGTTGTACTAAAATCAAGGAAATAGTTGGAGTGAAGAGTTGCGTTGATTTGAAAGAAACTTCTTACAATGGAGACCCACATGTACAGCTCAATACAGCAGCGGCAACTTGTGACTCCAATTGTTTGGGAGAGAGAAACTCTGGAGCTCGAGCAACTGGTTTCCGAAGGCAGCTCTTCTCCAGTGACAGTTCTAGTTCTGATGAAACTGCTTCAGAAAATGGAAGCGATTGGGCTGATCCTTGTGAAGATCTTCTCTCTCGAACACATCTTTAACCCTGCTGATTTGAGATGCTAACGTGAAACTAGTAtaatcaaaaaatgaaaaaaataaaggaaaaaaaataaaaaaaaataaagtcttcAAAAGATGCTAAGTTTGAAGACTAATTTTAGCTTAATTTTAGTTCATTTCTTCCGACATGTAtcttcatctttaaaaacaattcacagTTAGGTGTTAGGGACAATCTTACTTTTTCCTCCTTGGTTTTCCCAGTCTTTTTGCTTTTGAACTAGATTAGTTGTGGTGTCTGAATGGTTGTGCATGTGCCTGTCTTACTAGTATCACTGCTTCTTTTACAGCATAACTGCTACTTTCCATTACCTAACTGTGATAGTACTGTTATAACCATCTTAAAAGCACTGCATTGTCTTTTACATCTGCTATTCAGAAAATTTAGAATTTGGcacagtcttgtttttttttgtgtaagaACTTGAAGTTAATTCTTTGATTAGTGCCTTTCTGAATACAGGAGAAAAGCATGGATGCAAAaccttattttgaaaaaaaccGACTCTATCATAAAACTTTGTTAGGATTGTAAGGGTTGTGCTTagtctaaaatatattttgactgATGAtagaatccttttttttttccttcattttaattagtagtgtggtttgtgaaaaaaaaaacatttaaaagaaagaaaaaaagaaatgtaactgTGAAAGCCCAGAAttgttttggggggaggggggttcaTACATATGTACAAAATTAATGACTAACTGATTTGGTCAATTGTAATATGGCCCTTTATTCATGAAACAATTGGTTATGTTTGTGAAGACACTTAAGTTGACCACATTAAATGAAAAGGTTATTTATATCCTCTTTAGGAGAGAAGTTGGTGCTATTAATATCTAAAGAATTCTGTGGCAGTTACAGTTAGATATTGTGGCTGTGATTTTGTAGGTCCTGTAGTTTTGTTTGTCGTTATGGCAGAGTGTAAGGATCAGTTgtctcaatttaaaaaaacaaaaaagaaacaaaaaataataatagtttgacTGCTGTAGTGGTTGTTGCTTCATGTGgcttgcttttctttattttttttaactagtaAGTCAACAGATAGACTTGAAATAAAAGCTTTTGAGGctgtctgatttttttttttttttctttcaacaaaTTCAAACCACAAAATGCAGAAACAgtaattttgactttttttattttatgcaaatgaaTAACCCCGgaatacatttcacagaaagTTTTGTACACTATAAATGCATACGTCCCAACCGAAAGAGTACGCAGTAAGTTTTGGATCTAAAGGCaataaccattttaaatatacaatgcaGACAAGACCAAACTGAGAGGAACTTACTTTGAAATATGTTCTTGTTTGTAAAATTATATGTAGCTAAAACATTTGAGACATCACCAAGGTACCagttattaaagaaaaaacgctttttgtttctctcttgggtctactttttactttaaattatgGTGATGTGATCTTGTTTAaatcttttaatatttgtattgtgtatgtttgtgtgtgtgtgcgtatattTACATGTTACAGTGGCTGGTTGAGGCCatgtgtaaacaaaaaaaacttgtgaTCACAAGAATTTATCTTGGGATTTCCATATTACCAGTCATTACCTTAGAATCACAAGGTAACACCCTGGTAATATGGTGAGCCTGTGATAAATTATCCTGTGACACATCttgtgatttatatatacacacacacacgcactcgcATACGTAAAAGTAACACTTAAAAATctgtctatatatttttattttgtgttgtcatttccttttttgtttcccttcctATTTAGAAGTAGCATTTTTTTGATTCATCTCTGAGCTTCCTGAAGGGTTGATGTACCAGCACTTTAATTTTATAGTCACCTTTGGAATTGGCAGGGCCTTTTACCACAATAGGGGCATTGTTTAAATGCCCAAGAGGAGGCTTCAAGTCGAATGCAATATACCAGTGCATGCAACACTGAAAATTCAAAAGGATGTATTGCAAATAGTGTTCCACTCAGTTTATTTTGCATGAAGCGTATTTTTTCAGAGTGAGAAAAGGCTAAAGGGTAGTGGGTTGCTGTTTCAAATAGAAGCTGCATGCTGCTCTAACACTCCAGCACCGTTTGAGTAAGAAAATTCGAAAGTGGATAGAGCAGTGAtagaactgttttattttatttttctagtgtgtgcgtgtgtgtgcgtgcgtgtgcgtgtgtgtgtgaaagagagagagagaccaagtCACAAAACACTTAAATGGGATAGTTGGAGGAATgtgcattgcattttatatgGTTAGGTTATGTACATGGGAGAAATGTTTCCAACAAAGCATTAGAAACAATATACAGAGGTTAACAGATTGATGGCACTGTGGTCTGAAGAACATAGCATATCCATAGCACTGAAATCTTGGTTCCCCAATTCCTTTTCTCTCCTACATTTTTCACCTACCCTACCTCCTATCCCACCACCTCTCCCATCCCTCCGTTTcaaattgttgtattgtttcatGTACACCTgagtaaattattttgtttcattgtggAGTTTCTTAACatctaataaagaaataaatccatttccctttgtttattttttccctgatcatactttagaaaataaagtacaattgCTTAGTGGGAGCTTCGGATCCTGTGATTTAATTACACCAATGTATAAGGTTAAGAAGTTcatattcaaacaaaatattagtgattttttcccccccaccctcttaCATTATTTGGAATGATGTTTGGAGAAGTTAAATGAAAtggaaagtatttgtttttcagagcaTCTAATCTTCAAAACAGTGGCTCTATTTCAACAGCTATGTTTAACCTTTGCAAAAGCTTACTTTGGGAAACTGAAAAGTGAAGACAAGGATCTAAGAtccttgaaaaaaatattgcacatCCTTAGCAAATAATAGGGGTGTATGAATTTGTGTCCTTGGTAAAAT

Function

GO:

id name namespace
GO:0031323 regulation of cellular metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114374 lncRNA upstream 186929 13196895 ~ 13259572 (+) False AMCG00017600
TU114376 lncRNA upstream 199848 13243577 ~ 13246653 (+) False AMCG00017600
TU114365 lncRNA upstream 305623 13140662 ~ 13140878 (+) True G91683
TU114318 lncRNA upstream 385855 13059856 ~ 13060646 (+) True G91649
TU114286 lncRNA upstream 555145 12865187 ~ 12891356 (+) False G91619
TU114421 lncRNA downstream 47830 13522641 ~ 13526149 (+) True G91726
TU114422 lncRNA downstream 53970 13528781 ~ 13533210 (+) True G91727
TU114429 lncRNA downstream 351713 13826524 ~ 13830813 (+) False AMCG00017615
TU114438 lncRNA downstream 383406 13858217 ~ 13913757 (+) True G91740
TU114570 lncRNA downstream 569273 14044084 ~ 14044528 (+) True G91849
AMCG00017609 mRNA upstream 17327 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017608 mRNA upstream 24055 13419796 ~ 13422446 (+) True AMCG00017608
AMCG00017610 mRNA upstream 63050 13371615 ~ 13383451 (+) True AMCG00017610
AMCG00017600 mRNA upstream 186741 13243567 ~ 13259760 (+) True AMCG00017600
AMCG00017595 mRNA upstream 368474 13061741 ~ 13078027 (+) True AMCG00017595
AMCG00017613 mRNA downstream 27136 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017612 mRNA downstream 67650 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017615 mRNA downstream 306455 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017619 mRNA downstream 518780 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017620 mRNA downstream 550825 14025636 ~ 14038327 (+) True AMCG00017620
TU114078 other upstream 1566002 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 3863221 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 4692720 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 4757095 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5313647 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 562065 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1602514 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1637799 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 2392220 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2660214 16135025 ~ 16135316 (+) True G92130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2007309 True 3009 lncRNA 0.38 2 NC_048585.1 55071557 ~ 55074587 (+)