RNA id: AMCG00017612


Basic Information

Item Value
RNA id AMCG00017612
length 5251
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00017612
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13542461 ~ 13548563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGAGGCACTGCTGCTTCAACAACAAGCAGAAGCCAGCAACATGGCCGACCTGGGGAAGAAGTACTGCGTTAATTGTCTGGCAGATGTGACGAACCTGCGGCTTCGGTGCACCGACTGCCAGGACATCGAGCTGTGCCCCGAGTGCTTCTCTGCAGGCGCGGAAATCGGCAACCACCGGCGATGGCACGGGTACCAGCAAGTAGACGGCGGCCGATTTACTCTTTGGGGTGCCGAGGCAGAAGGAGGATGGACCAGCAGGGAAGAGCAGTCGCTCCTCGATGCGATCGAGCAATATGGCTTTGGGAACTGGGAGGACATGGCGGCTCATGTTGGGGCCTCTCGGACGCCCCAGGAGGTCATGGAGCATTACGTCAGCATGTACATTCATGGCAACCTGGGCAAGGCATGTATCCCTGACAGCATCCCCAACCGAGTGACGGACCACACCTGTCCAAGTGGTGGGCCGCTCTCTCCCAGCCTCACCACTCCACTGCCGCCCCTCGACATCTCTATagtggagcagcagcagctgggcTACATGCCCCTGCGCGATGACTATGAAATCGAATATGACCAGGATGCCGAGACGCTGATCAGCGGGCTGTCGGTCAACTATGACGATGACGATGTTGAGATCGAGATGAAACGCGCCCATGTGGACATGTACGTGCGCAAGCTGAAGGAGCGTCAGCGACGCAAAAACATTGCCCGTGACTACAACCTGGTGCCAGCCTTCCTGGGGAAGGacaagaaggagaaagagaaggagaaagagaagcCAGCAGCTGGAGGGGCGGCCGTTCCCCCTGTAGCTGCCGGCTCTTCCGCCGTGGCAGCTGCCCCCAAGCGTAAGATCACaaaggaggagaaggagcagCGGCTGAAGCTGCGGCCTCTCTGTCAGTTCATGGCCTGCCGGGAGTTCGAGGAGTTCTTTGAGAACATGCACAAGGAGCGCGTGCTGAGGGCCAAGGTACGTGAACTGCAGCGTTACCGACGAAATGGCATCACCAAGCTGGATGAGTCGGTGGAATACGAGGCAGCAAGGCACAAGCGGGAGAAACGCAAGGAGAACAAGAGCGTGGCTCAGTCCAAAAGGGGTGGTagtggaggtggaggaggaggcagtGGAGGGGGAGGCAAAGAGGACGGCAAGGACAGCGAGTTCTCGGCTATTGAGAACCTGTCTGGGTTTGAGCTGCTCTCCGACCGCGAGAAGGTTCTCTGCAATTCCCTCAACCTCAGCCCCACGCGCTACCTAACTGTCAAGACCATCATAATTAAGGACCACCTCCAGAAACGCCAGGGAATTCCCTCCAAGAGCCGTCTCCCTAGCTATCTGGACAAAGTCCTCAAAAAGAGGATCCTGAACTTCCTGACAGAGAGTGGATGGATTTCCAGAGACGCTTCCTAATAGccctggttttttttttgttttttttgtttttttaattctttttcaCGAGAGATTTTATCTATGTCTGGCCTCCATAAGTTTAAATGGGCCAATCtactggattttgtttttcattgttatatttttgtcaatAGTGATCACACTTCCAGTACATGGTAATGCTGAGAATGCATTGGGAAATAgaagtaaacaaaaaagaagacagggaaataaaatatttgcagtgTAGTAATAAAACCGTTTTATAAGTGAACACACTGGAAAATGTTTTGAGTATGAGCAGCTCATACCGATGTGGATGCTGTTTGCTGTTTAATTCACTATTTTTGCATGGAACAGACCTTcttgactattttattttaaggcaaaATATAGTGTCACTTCTGTACATGCCATGGTACACTGTGTTCCTGAACTTCAGTCATGTTGAACTGACATTGCTGCATACATCTAGATGACTGTGGTATACAGAGAGCACAAATATCTCCTTTTAGGAGGTAATTGGATGCCCTGCACTGTTCTGCACAGTTGAGAAATTAATCTTGCCTCTCATCTCTTACAGAAATAATGCAGTAATCTCAAAATCACCCTTTTACATTCTCCTTTGTGATGATGCTTGTTTGATGGACATCTTCATGGGTTGATCCTTATAGTCTTTGTTTCTGGTGTTAGTTGCCAAATGTTGCGTTTGTAGGTTTCTACAAAGTGACAAAAGCCTTTGCCAAGGAAAAAGAGCCAGGTGTGTAATTCTGTGGATTCTTCCGTATACACAtgagagaggaaaggaaaaaagcttTAACGTATCAAGGTGggcatttggttttaatttaaatgtttttaaagcacaaaatgaGGATTAGAATGCATTTCCAGCCAGCACAGATGCTTGAATTGTGGTGTTTTATCTGAAGTCAGTGTCACTGGCATCTGAAAGGACTTGGTCAAACCTGTTTTGCCTGACACATTGCAAGCTTATAACTGTGTTTCTCCCTTTATGAATATGTGTAAAGCATGTTTATGTGgaacttgtattattttattacaggcTGTGTAGTAGAACTGCATACCATATGAAGGGGTCGGGGGTGACAATTTGTCCTAAGAACCTAACTAACATGCCCAAACCAGGTTTTTATCTTCATTGGTGGTATACATGTGAAACTCACTGTATTTCTTTTGCAAGAAAAGTTTGTTTCCCTTCATCATATGACCTGCAAGGCCTTCTGGTGCTGTGCATAGTTACCAAAAGGTTTTAAACTGTTCACCTAAATGTACTATCGATAGACATTAGCTCATGTGTCTCAAATGCAGTATGGATCGTAGTTCAGAAATGAAAGTCCTACACTGACTCTATAAGCCTTTGCTGttgaaataaattagtttattgTCAATTTAACACATTGCCTTAAAAAGGGGGCTCCTGTTCTACACAAAGCCCTAATTTGCATTCACTTTAGTCCATATTTCtgtgaataattgttttatttaacttaagcaatacagtacaaattGCCAAAGGATGACATACCCTTTAAAAGATGGCATAAGCTTTAAAGGAACAGTTtagtaaaatcaaaacaattctgtaaaaatgcaaaactaaaaaGTCAGATTTGGAAAACTTAACAAGGTTTCCTGCCCAGTTGAAGCACAATGGTTAGactaatatgttttttatttttcatttgtattaattgtggGGATTCAAAGACATCAGAAGTGCCCCAATTTTGAGTCAGATTTATGAAAGTTACAACTTATATCCCAAGTTATTCTTCAGGATCGGCAAAACCGTCTGACGTTTTGGCACCATTTCCTCATCAGCAGAACTCAGAAAAAGTGCATCTGGCCTACATTAAGCTGATATGCAATGCAGCTTTTTAAttggttatttatatatttatatggaaATGAGAAGTTATATGTACAAAAGTCTTGTTCAATCCGAATCACATCACCCTGTAAAATGCACAGAGAGTCTAGAAGCCTTCAGCTTTAGTATAACATGATGTGCTCTAGTATGTGATGGATGCTAGAGAAACAGACCAAAttaaataaggaaacaggaagtccATTGCCTGTACTTATGAAAGTATTACATTTATGCCACGGTCTCTGTGAAATGTGTAGTCTTTCAGTAGAGGTTCTGTATGTCATCAGCTGCTCAAGTACTTTCtcctgttatatttatttttatttaagtttttttagcCTCCGTAGCAGTCTGAGCATCTGAAGGCATAAGCTTCAGTCTGTAGACCGGCGGTACTAAGCAGCTCTCGACAAAGGCTGGAAAACATTGACAGATTAGGGGGAAGATCATCAAAAGTAATCAAACCTGTGCTTCATGCTACTAAATCTAAAGTTTAAATGAGACCCCCTTAATAGGTgtcataaacaaaatgttttagtgtttgatttctttatttagcattttctAAAGgtgaaatttacttttttttccttttactttaCAATACTGCCCTTAAAGATTGAGGAGTATAGTGTATGtcattgtgttgtgcttttttgttttgttttgttggtttcttATTGGGAGTCCTCAGTTTGTCTTGTTGAAGATGTGTGTGAGAGCACTAAGGGACAAACCCACAGTGCAATACTGAACATCCCTCGCAGTGCTGCACTGTGCTGGTTTGGTGCTTTACAGTTTGACAGGTtgtgctgtgtctgtttttttttattgtgtacctttttcaaattaacagtTGTGGTTATATGATTATAGCATTTAACAGTGTATCATAATTTATTGTTTGGGTATAGTTATGGAATCACATTGGGGTAGTTTTTGTCCTATCTACACCGCAAGTGAAATTCTATCCCTTTGgtgaaatgtttgtgttgtactgtgttgCCTCCTACCCTCACCcttttaaaagctgtatttgTAAAGTGCATGCTTACAAGGCAGAACCATCACAATGCACACGATTTAAAGGTATTTTTTGATTTCTGAAACCAGCAGCCAGTGATGACCTACCTTCTCAATGTATTTTGCCACAGAAATTGCTCACATCTCTGAAAGGAGAGGTGTCCACTTTCCCAGACCAGCTTTTATGTGGTTGGTTGTTGTTGAAGTGAaacttaatattaaataaaactaaaaaagtgtAATGTGAAGTGTAATGTCCCAAAGGTGGTGGGATATCAAAATCCAAACAGTTTTCCTTCAGCACGGAAAATATGAAGCCAAGTAATAGATGAAACAGATTTGACTCAAAGTTAATTTGGAGCATGTACAAAACCACATTCAATTGTGATTTTGAGCTACAGAGCGAATCCTTAAACTAAATCAACTGGCTTTTCCttacaagttttttttgtttgtttgtttgttttttatttcatggggaatttgttaaatattttagcaATTGTAAATacgttttgtaaaataataagaaaaaaagtataaatactgacctgtgaaatgtaaagtattttatttcaggaatattttataacttttgtacaaaaaaaaactaaataagaaaaacatgaagaaacATTGTTAAAAGCCTTCCTCACTCTGTCTGAGCATGCTGTGAACCTGTTCTTGTGTCCCAGTAACTAGCGtagaaatgttatgtttgtaAGCCTAGAACTGTTGGTGAATTGAGGAGGGCTATTCTATGTTCTTACTTTGTGATTGCACATGGAATTGTGTGtcattacatgttttgtattaaagtgCACAtactttacatttcttttgatTCTCatgattatttgatttgttaACTTGGAAACCTAAGTCCTTCAGGAATCCAGGGCAAAAGGGATTCCTTTTTATTGATAAGCTTtcgg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15127 TADA2B; transcriptional adapter 2-beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114422 lncRNA upstream 9251 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 16312 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 282889 13196895 ~ 13259572 (+) False AMCG00017600
TU114376 lncRNA upstream 295808 13243577 ~ 13246653 (+) False AMCG00017600
TU114365 lncRNA upstream 401583 13140662 ~ 13140878 (+) True G91683
TU114429 lncRNA downstream 277961 13826524 ~ 13830813 (+) False AMCG00017615
TU114438 lncRNA downstream 309654 13858217 ~ 13913757 (+) True G91740
TU114570 lncRNA downstream 495521 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 969669 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 1251528 14800091 ~ 14800376 (+) True G92005
AMCG00017613 mRNA upstream 24294 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 67650 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017609 mRNA upstream 113287 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017608 mRNA upstream 120015 13419796 ~ 13422446 (+) True AMCG00017608
AMCG00017610 mRNA upstream 159010 13371615 ~ 13383451 (+) True AMCG00017610
AMCG00017615 mRNA downstream 232703 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017619 mRNA downstream 445028 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017620 mRNA downstream 477073 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017618 mRNA downstream 520211 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 581070 14129633 ~ 14132463 (+) True AMCG00017626
TU114078 other upstream 1661962 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 3959181 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 4788680 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 4853055 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5409607 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 488313 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1528762 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1564047 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 2318468 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2586462 16135025 ~ 16135316 (+) True G92130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066465 True 3503 mRNA 0.42 2 NC_007118.7 39738505 ~ 39743452 (+)