RNA id: AMCG00017615


Basic Information

Item Value
RNA id AMCG00017615
length 6343
RNA type mRNA
GC content 0.42
exon number 24
gene id AMCG00017615
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13781266 ~ 13830819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTATTCATCAGCACGGATGAGGGAGCCATCTTTCAGAGACAGTCCCTCTCCTTCACTGTTGAGACGCTGGTCTTCCACCCTAAAGAAGAGGACAAACTGCTGGCCTACAGCAAAGACAAAAAGAAACCAAATCTTCTGATATGGTCTGTGGCAGGAATTGATGTTGATCCTGACCTGGTTCATATGGAAATGCAGGACACCAGTggagGCTTCCTGTATGTGACCTGCTTGATCCAGAACTGCTCTGACAAGATGGTGACGGCCCAGTTCCTTGGCAAGATAGATCAGAATTCACTGGCAGTCCAGGATGATTACATATTTGTGAAGGTAACAACTGGAAACCGAACCAAGCACTACGTCTCGTATCGAAGGAATGAATTTGTGCAGATGAGGTTCCCAAAGTATGCCTTACCAAAGGACGTGCAGATCGTCAGTACAGATGAGAACCAAGTGTTTCTTGCTATCCAGGAGTGGTACCAAACAGACACCTACAACCTCTACCAATCAGACCCACAAGGTGTCTATTATTCCATTGTGTTAGAGAATGTACGGAGCACCAAGCAGCCGGAAGAAAATGTTCTCATTGATATTTTAGAGGTTCGTGGGATTAAAGGCATCTTTCTAGCCAATCAGAAAGTGGATGGCAAAGTGACAACTGTCATCACTTATAACAAGGGCCGTGACTGGGACTACCTGAATCCCCCTGCCACTGACCTGAATGGCAAGCCTGTCAACTGCAAACCGCCTGACTGCCATCTCCACCTCCACCTGCGCTGGGCAGACAATCCTTACGTATCGGGGACCGTACACACCAAGGACTCTGCACCTGGACTGATTATGGGGGCTGGCAACTTGGGCTCCCAGCTGGTTGAGTATaaagaagaaatgtatattacttCTGATTGTGGGAAATCCTGGAGACAGGTATTTGAAGAGGAGCACCACATTTTGTATCTAGATCATGGAGGAGTCATAGTAGCCATTAAGGACACCTCAATCCCGCTCAAAATACTCAAATTCAGCATTGACGAAGGGCGGACCTGGACTATCCACAACTTCACGAGCACTTCAGTTTTTGTGGATGGGCTTCTCAGTGAACCCGGAGATGAAACTCTGGTCATGACggTCTTTGGCCATATAAGTTTCCGCTCTGATTGGGAGCTGGTGAAGGTTGACTTCCGGCAGTCGTTTCCCAGGCAGTGCACAGAGGCCGACTACGATGCATGGAAGCTAACTAATTTGCAGgGAGAGCTGTGCATCATGGGACAAGAGAGAAGTTATCGAAAGAGGAAAGACTCGGCATACTGCATCAAGGGGAAGAGCTTTACATCGGTTTTAAAGTCAAAGCCCTGCCAATGTACTGAGAAGGATTTTAACTGCGATTATGGCTTTGAACGGGCCCCCAGCCTGAAGTCTGAAGGCGACCGATGCTTTGCTGATTTCTGGCATGACCCCATCTCTCCACCGTACGACTGTTTGCTAGGGCACAACTTTTCCTCCAGCACAGGCTACCGGAAGGTGGTGATGAACATCTGTGAAGGAGGAGTCAACAAACAGCAGAGCTCAAAACAGTACACCTGCCCTCTGCTGCCCCCTAGAGGGCTACAGCTTGGCATCAAGGGCGAGTCTCTGGCTGTGGGTCCCGGAGATGACATCACTTTCATTGTCAGACAGGAGCAGGGAGACACTACAAACACCAAGTACCAGGTGGACCTCGGGGACGGGGTGAGAACAATATACCGCAACCTCACCGTGACGGACGAGCCCATTCAGCACCGCTACGAGAAACCAGGCATCTACCGGGTCACCGTGAAAGCAGAGAATTCAGCGGGTCATGACGAGGCCATGGTCTACATCCAAGTCACTTCCCCTCTGCAAGAAGTCCATTTAGAAGTGGTGCCTATTGCCGGGAGGAACAAGGAAGTGAATCTGACGGCAGTGGTCCTTCCTGCAGCTACAAACTTGACAGTGTTTTACTGGTGGATTGGGGAAAACCTCCAGCCCATACTCTCCCTAGAAAACAGTCTTATAACCAAGTTCCCTGAAACCGGAGAAGTTTCTGTGACGGTACAGACATCGAATGGACGCTCCATGGTCCAGGACACCAAAACAGTCCGTGTGTTTGatcAATTCGAGGTTATTCCCCTCAGGTTCAGCAAAAACCTTGACCCTTTCAATCCAAATATCCCAGAATGGAGAGAGGATATTGGGCAGGTCATTACAAAAATCCTAGCCaagGTAACCGATATTCCCCAGGTGTCCCTGGTTACTATGGTGAAGCCTGGCCTCCCAACGACTGCTGACTTGTACGTGCTTCCACCCGAGGGCAACTCAAACAAGAGAAGCCTAGCTGTCGATAAGAGGATTCCCACGATAAAGCAGGCTTTCAATGAGAATAACGTGAGCTTCATTGTGAGAGGAGGGCTGGCAGTGTTGGTGAATCTGGCCGATCCTGATGCAGGCTCTCAGAGGGGCGCAGCTGGAGCAGGAGTCTGGGCTCTCGcagttttgtttgtcttcagCCTGGTTGCCGTGGGGGCTTTCATTCTATATAAATTCAAAAGAAAACTGCCTGGAAGAAATGTGTACGCCCAGATGCACAACGAGAAGGAACAGGAGATGACCAGTCCTGTCAATCACAGTGAGGACACCCAGAATATCATCCAGGGGGAGGAGTTTATTGACGATGACCTCGACTCGCAAACATTAGGGAATCACTCGGGCGTCGTCCTGAGTATAAACTCCAGAGAGCTGCACAGCTACCTGACGAGCTGATGGTTAAAAGCCCCGTCAACAGCACAGACTCTTCTCTATATTTTATTGTTCGGTCTGGGACTTTAGCTGAAGAAGGGAAAGCAGCGGGTTCTCAAATTGTACTACAGCAACAAGTCTTTTTGTCCACGGTAAAGGATTTTCTCTTTGACACCTTCTGAGGAGATGAAGATACGCACTACAGAAGAGCACTTATTGGCAAGGGTCTCCGAGACTTAACCTGTAAAACCACCtattttagcatttaaaaaaaaaaaaggtgacatTCTCGGTCATTTGAAAGATTTCATGGTATTAATCTTATTTAACATCCTGTCAGCTTTCAGATCCAGTTAGGCTGTATCCTGGTTaacattaacttatttaataatagtaatgttgTCCTACTCTTATGAAGTGCGCTCAAGCAGCAGGTGcacttgtttagtttttgtgtcGGGCTCTGATAAGATTTCAAGAGCAAGAAGGCGTTACTTAACTTCTCAGAAGATGTTACATGGCCCTGTGCACTAAGTCACACTGGGTTTAGTGTATGAAACTGTCGCAGACCACCTAAGCGAGCTTTTCTCATTGATCTGGATGGTTGCTGCCAGAAAAGACCCCCTGCTCGACACTGAGAAGAGTAAAAGGCAGACTGAGATGCCGCACATTGCTGTAGGTAACGTGAGGAGGCATTCAGGCCTGAACCAGGTGTGTGTCTGACTCAAGCTCTCACCCATTCACCCGTATGATATTCTATATGAAATAGATGTGTGTAGGATATCTGCATGAGGGGTTCCTGGAAAGTGAAACATGGCACAGATATGTAGATTTTTAATACCCATTGATTATTGCATCCATTCGTATAGAGCATCTCCTAAATCTCACAGCTCCACAGTTTGCGCACACAGGGTTATACAGAGAGACATTGTCAAACACAAGTGGAACCACCTTTTCTTCTCACTGTACCAGCAGTGAAACCTAACCCAGGTTGTAACCATAGACTGTATTGTACCTAGTATTTGCCAAATCCGTTGAGAAGAATGCAATATTAACTTGAACATGACAGGACAGATTACTCTGCTTTTGCTTTACCATTTACTCATCGCAGCGTCTAAGACACAGAATAATGCTTTCACACTAATTATACCTTTCGAGAGAAATAAAggattgtaatttgtttagtgTAAACGTCAAATTGATGGTTACAGAAGCTACTTTCAGCTTCACAAAcacattcttttgttttgtttttaagagggTAAGCAATATTTCAATGGAAATGTTCTGTAGTATATTTTCTTCGTACTAAACGATTGGTTCTTTTGTATCTcgttgcatttttgttttctgaaaatggtTGACTGGCTGAACGACGACATGCCTGTGAGACAACAATTGATCAGTTACTGAAGCCACAGTGCTTTCtgagtgtttttgttcttctagTTCGGCCCAGCATCTCAATATGAGCTTAGTTTAATAGCAAGACTAACCTGTTAAACAGTTTGTATCAATTCAAGTATGGTGCATCATACCTCAAACCATAATCAAGTCTCATTAAGCTGGGGTACAAACCATCTCTCATTCCAGTTAATTGCATTtatctgcatttcatttacagCGTACTGTTGCCAATTTGTACTTATATCAATAGAAaacttttttaaactaataaaacagaaatactcCTTAATGAGTGCCTCAATACCAATTGTCACCTATCTGTCAGGaaagtaattaattgatttgtttgagACTAGAGTAACATTCTGTTAGCAAAGAATGAATGTAATGTATAcccctaaaaaataaattaaggatAAAATACCAGTAATGACCCATTGTGATGTATATAAGCACATAGAGGAGAAAAGTGGGTTCAGTAAATCAGTGGATCACATCCTAATCAATCTCTGAAACAAGCAGTATATGTATTAGATGTCCTTTGAGATGGAGCAGTGACAAACAacagtgcagtatattacaTATATCTCTCTGATGTTGAAGATTAATATTAAAGGGTGGGGGtgtaatttgcagtttaaaaatagcatttcaCAGAGATTGTGGTTGTTTCAATAGAGCCTATATTAGGCAGTCAGATGTTCCCTTTAATTTggtttgtacatttaaaaaaaatacattgtacataTTCATCTGCTCTACTAAAAAATACTGGGAGAATCTTACACATAAATACCAAATCTCGATCATAAATGGATATTTTCCACCATGTTTCTAAAGCACTTTTCACTGTTTTCACAAATAGCACAACACAAAGACTTCCTGTCTCATCATTTTTGTGTAGAAAAGTCATTTGCgacatttttgtttcacttatAAACAGTATCTTCAGTGGTCAAATTTcaggataataaataaaaatagaccatCACAACAAATagacagtttttattatttgatcattttcagACCCTAAACAGACAATTTTCACAATGGCGAGCAATTTTCTAAATTGGTCTTGAAGAcggcaaatgttttttttgttttcttttatggcTTCTAGTCATACCAGTTAACAATGTTACTTGTGTTAATAGTAGTGTATTATAGACTGTATGATAATAAGGTAATAGTGTTGAAGAGAATAAAAGCCATTATTTGAGCATTGGGAAGGTTAATTGTATGAAATGCTATTCAAGGTCCAGTTTTTTCCAGTTGAAGGGAATATAGATGAGAAGCATAACTGTGTTTGAAGCTATACTTACTAAACTAATTGAGATGGTCAacataacatatttttaaatcccagtTATCTCTATTGTGTACCATGAATACTGGTCCACATATGTGTACCAAAGACTGCAcgtgtagtaataataataataataataataataataataataataataataatactttatcaTCAGCATCAGTAATATCAATGTTTTCGACCCAATGCTGTCTGACTAACAACAGACTGAACTTCTCTTATCACTTGGTTGTAAACATGTAAGGATTCCTAAGAAAAGAAATGAATCAATCCAAGCTACTTTAAATCAGTGTCTCTCCTCAAGTTCACATTTTCTATACATtggcattaaaacaaaaagacgaCAGTTCACTTTGCCACTTTTGGACATATACTGGATGTGTCCACAGTACCTGGTGCTGTACTATGCCGAGTCATTACTGTACATCTTCTGTACATATGCTCATGTTGGCTTGTTCTTAGTTTTTTCGTGATGTgatgtttgtaaatatttggggtggtcagaaaaaaaaaacgatattTGTTTGAGGAGATTAATTGTTGACACAAAGTATGTGAAATTGACTGCACAGTTTCTTcttaatgttttcaataaatgtttgGATACACAGCGAGACATAGTGCACCTAACACAGTGTCCGGGTTCAACACATGACTTCTAAACTGTATAGATTTGTTCTAATGATTTGATCTGCTCAATAAAGACTTAACgttcttcagaaaataaaaacctccaAACGTATTGCTTATACTACTGTATACATACCTGTGTACTCTGCTGCATCCAACGGTATGCTCTGGATTTTACAACCTTCAAACCATGTTCAATAAAACTGGTTCCatactctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114422 lncRNA upstream 248056 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 255117 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 521694 13196895 ~ 13259572 (+) False AMCG00017600
TU114376 lncRNA upstream 534613 13243577 ~ 13246653 (+) False AMCG00017600
TU114365 lncRNA upstream 640388 13140662 ~ 13140878 (+) True G91683
TU114438 lncRNA downstream 27398 13858217 ~ 13913757 (+) True G91740
TU114570 lncRNA downstream 213265 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 687413 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 969272 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 1112564 14943383 ~ 15036381 (+) True G92016
AMCG00017612 mRNA upstream 232703 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 263099 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 306455 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017609 mRNA upstream 352092 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017608 mRNA upstream 358820 13419796 ~ 13422446 (+) True AMCG00017608
AMCG00017619 mRNA downstream 162772 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017620 mRNA downstream 194817 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017618 mRNA downstream 237955 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 298814 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 304781 14135600 ~ 14151779 (+) True AMCG00017621
TU114078 other upstream 1900767 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4197986 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5027485 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5091860 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5648412 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 206057 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1246506 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1281791 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 2036212 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2304206 16135025 ~ 16135316 (+) True G92130

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU416129 True 1624 lncRNA 0.45 2 NW_019172834.1 1009652 ~ 1012428 (-)