RNA id: AMCG00017616


Basic Information

Item Value
RNA id AMCG00017616
length 2616
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00017616
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13549425 ~ 13553804 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCAGTCATTTTGACCTTTAAACTCATCCCCAGCGCACTTCCTGTTTGACACCCGCCTTCAGCACGGATTCTATTGGTTGCTTGACCGAGCCGCTTGTATTCGTCTTTCTGATTGGCTGAAGTGACGCACGTCCTTGCAAACGCTGTGCCGACTCTGCCAGGCGTGTGCGCTGCGGAGAAGTGAAAATGGCGAGCTGGTGTGTGAGGGCAGTGAGGCAGAGCTATTCCATTATAGGATCACCTGGGCTGCTACGGGCATCCCCAAGGCTGCTGTGCACTGCTGCTCAACAGAAGAGCAATGGGCAGCGCTCGGAGGAGGAGCCCAGTGGAGTATCCAAAGTTGAACAAAGCCCAGCCGAGAAGGCCTGGTCAGAGGAGAAGGTCCAGCTAGAGGAGCAGCTCAAAGAGATCACAGACAAGTATAAGCGTGCCCTCGCCGACACAGAAAACCTGAGGCAGAGGAGTCAGAAGATGGTCGAAGATGCTAAATTATATGGTATTCAAGGCTTCTGCAAAGACCTTCTAGAAGTGGCTGATATTTTGGAGAAAGCAACAGAAAGTGTCCCAAAAGAGGAAGTGACCCCAGGGAACCCCCATCTGAAGAACCTGTATGAAGGGCTTGTGATGACCGAGGTCCAGATGCAGAAGGTGTTCACCAAGCACGGATTAGTGAAGCTCAACCCTGCGGGGCAGAAATTTGACCCCTATGAACACGAAGCCCTGTTCCATGCCCCTGTGGAAGGCAAGGAGCCTGGCACAGTAGCCATGGTCACGAAGGTGGGGTACAAGCTCTATGGGCGCACTCTCAGGCCTGCTTTGGTAGGGGTAGCAAAAGCTCCATAACCCATCCTGTCACTGTGTATACAGTTGTGTACAGTTTATCAGGCATAAATGCTAACTGTGAAGAGTATAACAAGATGGATTCCTCAAAAGAATGTACTGACCAGGTAACTCATTTCAATGGGTCATAGTTCTAATTGGATGGAGTTTAAGCATTGGACCTCCTATGATGACattaaactgtttgttttttccatgtcCAAATCTccctaatatttttttatttaaaaatacggGGGTGGTACCGCCACAGTACTGAATGAAACCCCTCTTTATATTCATTTCCCAGACACTAAGTTATATACTTCTGGTTCAAATTGCAATTTGTTACATGCAGAATCATCCTGCCATCACAATTTTAACAGGTCTCTATATTCTCCGTTAAATTGAACATCCCTGGAAGTAGAATCTGTTCACCAAAAATAAGTAGAACTCTAGAATTTAGGTCTCATTTGTGGACTGTTTATAATGTGCTCTGTAAACGTTTAATTTACAGCTTATTTAAATGCTATTAAGTAATTTGTATAGGTTTATTGCTTGTATAATATACTtttgtaataaagtaaaaacacttTCTGTAAAATGGGAAGAAATAACCATTTTAGTTCTCATGTTAGCTGTTGGGGGAATGGGGTGGGGGTCATCAGATCATGAGATTTCAACATATACAAGCATAAAGTAAggaatacagtatttaaaaggAACCAAATTTGCTTATTTCATGTTCTAAGTAGTTACAATGCCATCAGGGCTAATCTAGAGAGAATCCAACCCTTAGGCTACATTAACATACAAGGCCAACTGTAAATGAACAATCATTAAGGGCACACGACTCGTTCTATTGCAACCTGCAAGACTTGATAAATAAAACCAAGGAAGTAATTTTGTAAATTGGTCTCTTTGGCAACAGACAGAATTTAAGCAACTAAATGCACCTTCCAGGCAGAATTAGAGTCAGGGTTGTGCTCttgctttgtatttagtttcaaGCTTCTGCTGCATGTGGTCTCTTTGCACCAAGAGTGGATGTGATGAATCAATACTGCTTCCAGGTCAGAGATGGGTCTGCACCAGCGGCTGCTTTAGGgatggttgtgggttcagtcaaTAACTAAATCTCTTTTTCCATAAGAGAATCCTTGGTTTGGAAAAAAGACTCAAAAGTAGgtggctgtttgtttgttgcattCGAATAGTGTAAGTATTGGCATTGATGTGTTAGTATTTTGACATTCCAGACACTGTCAGAAGGGATCAGGATTTTAAATGGCACGatgtttattcaaatgttttaaacccTTTGCATCCCCTGCAGTGACGTCTTCCTGACTATTATAAAGAAGTGCCTGAGTAGCACGTCTGAGAGAAACTGAAGTTGAGTACATGAGTAATAAACCCACACTGATTTGTCTTTGCTGTCTGCCTTAGGAGGATGTGTGCAACATACACTATCAGCTCTTCTGATGCAGTAAGAGGTTATTGGTATGCAGCGTTTAGACTCATTTCATTACATTGTAATATCTTCTGTTGAGGGAACATGATTAATAAAAACGGATCAGAACAaactattgatttttttttttttgtgtgtgcagaaCTGTAACCTGACATGCTGAGCTGCTAATCTATTTGAGTAGTTTCGGTATATTATTGCTTTGTTAAATAggaaagaaatattaaaaaacaaatgttacctTGTCCATACTTTTGGGAAACATTTAACTATTTTACAACAGTTTTCTTCTAAACAAACCTTTAACAATGTCAGATTAAAG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
K03687 GRPE; molecular chaperone GrpE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 893092 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1028211 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1028211 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1040282 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 1049478 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 490317 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 1206277 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 1246286 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 1370589 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1500659 15054463 ~ 15054684 (-) True G92049
AMCG00017614 mRNA downstream 7287 13540585 ~ 13542138 (-) True AMCG00017614
AMCG00017603 mRNA downstream 245090 13285773 ~ 13304335 (-) True AMCG00017603
AMCG00017601 mRNA downstream 275592 13264231 ~ 13273833 (-) True AMCG00017601
AMCG00017607 mRNA downstream 306845 13237135 ~ 13242580 (-) True AMCG00017607
AMCG00017606 mRNA downstream 323422 13216299 ~ 13226003 (-) True AMCG00017606
AMCG00017617 mRNA upstream 277542 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017624 mRNA upstream 357281 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017622 mRNA upstream 456110 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017623 mRNA upstream 492076 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017625 mRNA upstream 581107 14134911 ~ 14186450 (-) True AMCG00017625
TU113928 other downstream 3052321 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 4793518 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5034470 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5552830 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 5716833 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 879354 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 2313143 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2476598 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2476652 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 3914801 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile