RNA id: AMCG00017618


Basic Information

Item Value
RNA id AMCG00017618
length 3281
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00017618
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14068774 ~ 14084436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGTTACACCTTTGTTATACCCCATAGATTTAGCCAACATTACGTTTGACGTAGCCTAATTATTTAATACAGCGTTGTAGCGCAGGTTTCCGCacttctgcgcagatctgcagagtTCCGCGCTCCCATTGCTGGagctgcgcagaactgcgagAATCTGCACTGCAAGTACGCGACCAACGTAATAAGGAAACATCTGGGCAAATCTTTCttatttgtgtctttattttagAGTCATATGAGGTATTGTATTGTTATGTAGGATTCTGCAGTGCTTAAATAAATcagcaaacacaaatacatcatATCAATTACTAGGTGACGACTAAAGTAGGGGCCGAAGGAAAGATGAAATGCCTTGACGTCATCAGTGTGCGTTGTAGCATGGCAGCCCAGTAGAATGGCtttctgttaaaaacaaaaccatgtcaAAACTTTccgaaatacaatttaaaggcAATTGCGTTGCAGTGCCAGAGGGGTTTTGGTCTGCTATAGATGTCTGGTTAAAAAAACCTAATGTTGTGAATAAAAGACTGTGTGGATCCAAAGAGGAAGAGAGTAAAGTTGTTGAAGCTGCAGatattgaacacattttgtctgcattttGGAAAGAAGACGTTGAAGACCTGAAAGATGtaatttactatttaaataACGGTCTTGAAGGGAATAACCAACACCATACTACGAATGGGGGACTGAGTTTTGCAATAAGATCAATAATCCCAAAAGTGCATCTGACTGAAACTCACTTCAAAGAAATCACTCTGAAAGACATTTCCAGCCACCGTGTGACATTTCTGCCATTAGAAGAAAATGCAGAAGGACATTTGGTTATTAAAAAGAGCAACATTTACCAAATACAACTCCAATCAGTAAATTGTGAAGAATGgtccatttccatttccactcTAAGTTCCGAAAGCTGGTTTTCAGATGGGGTGATTTATCCCAAACTTGCATGGCTCAGCACAGAGCTGCTGCCAAAGCTGGTAAAGTGGTCCACTGAGAACACAAAGAGTGAATTTAAGAGTACTCTTTCGCTTATTCCTGTGGAAAAGTACAGCCACTTGTATcagaaactgaaggaaaaatacaaagaaatggtGAAAGTTTGGCCTGAAGTCACTGATCCTGAAAAATTTGTTTATGAGGATGTCGCCATTGCAACTTATCTATTGGTCTTGTGGGAAGAAGAACGTGCAGAGAAGGGCTTGACAGAGAAACAATCCTTTGTAGATCTGGGCTGTGGAAATGGACTTTTAGTTCATATATTAAGCAATGAAGGACATAGTGGAAGTGGCATTGAtgttagaaaaagaaagatctGGGACCTGTATGGACCACAAACCAATCTTAAGGAATGCACAATCACGCCAAGTGATAGCTTCTTATTCCCAGAAACAGACTGGTTGATTGGAAACCACTCAGATGAGTTAACGCCATGGATACCTGTTATATCTGCCAGGCATGTAATCTCGTCCTCGTATTGTAGCCGCTTCTTTGTACTGCCTTGTTGCTTCTTTGATTTTTATGGCAAGTATAACCGGCAACATTGTAAGAAGTCCCAGTACAAGGAATATATTGATTTCATAGCTGAAGTGAGCCatgtgtgtggttttgaagTGGAAGAAGACTGTCTAAGAATTCCTTCAACAAAAAGGGTGTGCCTTATTGGGAAGTCTAGAAGCTATGACTCCTCAAGGGAGGCCATGGTGGATGATCAAAGAACCCAGTATATTAAGAAAAGACAATGGAGTACAATAGCAAATGTTTCTAGCAAAAGAGAAACCTCTTCTACAGAACCAACAGGTGATAGTTCCAACACTGAACGGCATCCTCACGACAATGCCGAGGGGTTTCTTCATGAAGTGGAGAAACAAATCCCTGTCACTAGGAAGTGGGCAGAAGGATTTCAGCCCAGATCAAAGATCGAGCCGATGAGAAACTGTGCTACTCTTCCTCGCACTTTAATTGACAAAGTTGTGCTACAAGTGGCAAATGCTCTGCTGCTTTTGAAAATCGACGATAAACATACACCAAGTGATGAGAAGACCTGGAACCGGGGAGGAAGTCTATCAATTAAAGAAGTAGCAGAGCTTTTGGATAAGGAAACACTACAGAATCTGAAAAATGAATGTGGAGGCTTACAGACCCTTCTGAAAAACAGCCATCAAGTATTTAAAGTTGAAGGTGGAAGAGTACAGATGCGTGACTGGAGAGTGGAGACCATACGGAGGAAGCCCAGACTTGACCACAAGCGCAAACCTTCCGCCGAGATGCTTAAAACGCGAATGTGTTGGTTTCATACCAACCACCCAGAAGGCTGCCCATTGTCTTCGGACTCGTGTTCATTTGCACATGGACCAGAAGACCTCAGACATTTCTCCTTCAAgagtaagaaacaaaaaagtgctTAATTTCAGTGTCAAGCATTCAGATTCACATAAAGTCTGTTCAAAGCATGTTCCGGACATTGATATCAGACTATCTGGCAGCACATCAAAATTCCATAATTCCTCAGCTATTAGGTAAGTTTAAAACTGTGGATGATGAAAACTATACTAAATCCCTTGGGGTACTAATGGATGACAGATTGCCTTGAAATAGCTAAGTGTAGCATATTGTAACAAAGCCACAGGCTTTGTTGATTCTAAAACGCTTGGCAGGAGCCATGGGGGATTTAGATCTGCTGATAGCTGCATAGCAGGATTTATTAGATCAATCCTGGAACAAGCTTtactgtttgtattttgttttctggattAGAACTCCAAAACAGCAGTTGGgccaattaaaaatgttcagtgttaTAGTTCTTGGAAAATGATGCTTTAAACATCTCTTCCACATCCTCAACGACCCAGGCAAGGACTACTTAACATATTTTCCAGATCTATTGCAGTTCCAATATTTTAAAGCAGGAACAACATTCATGTTCTGCCAAGTTAACCACTTTGCATTTTCGTCCCACTAGACTATTAATCTTTACTCCCACAATGTGGCAAATGTGTTTCAAAGAATGTCAAATATATGCTACACCTGTCTATATATAATGATGCTtctgaataatacatttgttgtaatgttttatttatttgcctttttaCTTCTTTTAATTGCCATCTTTGCCTTTTCAGTTCAggtatttgtcttttaaattacatacaattttttttctcgGAAATCTGTAAATGTACTTACTTAGGTACAATACATAACTACGTTGGACTTGATTGCTGcatataacagaaataaaagtaaatcatAAATCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15447 TRM44, METTL19; tRNASer (uridine44-2'-O)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114570 lncRNA upstream 24246 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 155017 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 237961 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 535564 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 542625 13522641 ~ 13526149 (+) True G91726
TU114661 lncRNA downstream 433796 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 715655 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 858947 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 977861 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 981701 15066137 ~ 15067818 (+) True G92039
AMCG00017620 mRNA upstream 30447 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017619 mRNA upstream 59518 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017615 mRNA upstream 237955 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 520211 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 550607 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017626 mRNA downstream 45197 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 51164 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017628 mRNA downstream 383154 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017637 mRNA downstream 641540 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017636 mRNA downstream 664245 14748681 ~ 14764827 (+) True AMCG00017636
TU114568 other upstream 29711 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 2188275 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4485494 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5314993 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5379368 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 992889 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1028174 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1782595 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2050589 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 3517099 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile