RNA id: AMCG00017619


Basic Information

Item Value
RNA id AMCG00017619
length 4961
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00017619
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13993591 ~ 14009256 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGAATACATTGTGAACTGCTTTGACCAGGGCAATGCACAGGACGAGCAGCTGTGAGCGGGTCCAGGGACATGATGGTGCTCAGCGATAATGCAGATGCCCTGGTGGGGAATGGAGGCCAGATGGATGTTGGAAATATGTCATCCACAGGGAAGACACTCCTAACCACTGGACACCAGCAGGAGCCGGCAGATATGGCCATCGGTACTGGGACAGATGAAATGGACTCTGATCACCTGCAGGAGCCCAAAGCACTAATGGCAGCCTCTGCAGCATCGGAAGACACCTTTCCAACAGCGATCTTCATGAAGCTGGTGATGGTGCGACGGAAGAGCGGACATCCTGATGAGGGGCTGCAGGAAGTCCTGAGAGGAAAGCTGCGTATTCTGGAGAATGACAGTGGAGAGGTCATGGCACTGTTCAGTgaACTTTCAGTCAGGCTTCTGTCAGTCCACAGTGATGAGGGTGTAATAATGGtcactttcaaaacatttgaagagaTTTGGAAATTTTACACATATTACGACCTCGAATCCTTCTTTGCAAAGTGCACTGAAAATCAAGTCTTCGAGAGCATGTCCTCAGGCTGTGAGCTGCTGCTGGACCAGGGACACATACACATCTTTGAACCCCCGTCCAGTGGCTCTGAATGGACAGTACAGTCACTGGCCGATGGCTCAAGAGGGTCCATTTCCAAGCCAGCATTGGAGCCAGTTATCCCATTTCATCAatGGTTCCTTAAATCGTGCCCTGAAAACATCCTGATGAGCACTGGGGAAATGGTTTGTGAATTTCCGTTTCAGTTTGCTGTGGGCTCCTGCCTGGCTGTGGTGGAGTATGAAGGCTGTGGGCCAGACGAACTCAGCTTTGAACGTGGCGATTGTGTTGAAATTGTGGGTTTTCTAGTTTCGTGCTTTGAGTGGTTTGTGGGAAAGCATGCAGAAACTGGAAGGGTTGGACTGGTGAAGACAAGCCTTGTAAAGCCAAGCGAATCTGTTAACGAatcATCTGAATTTTTTCTAAAGGGGGAAGATAGATCTTTGTTTAAAGATCAGTGCATTGAAGAAGAAACCTTtcatctgattaaaaaaatttCACAAACAGACATTGGTGCCGTTTACAAGCTTGCATCTGCCTCTTCCAGTAATGAGAGCGATCCAATGAGAAAGGAGTTGCAGAGTAAAATAAGTGTGTTTCTGAGTGGAGTGAAGGAGCCTCATGTTACTCCAAGTGTAACACAGAGCGAAGAGAGACAAGCAGAGCATGGCGACTCTCAGCCCTTCAGCGAGCGCAGAGACTCCTGCTTCCCTGTGGACAGTGAAGACGAGAACAATCACAGCCCCGACAGCTTTCAGTCGCTGCTCGAGTTCCTCAACTGCAGTGAATACAAACAGGAATTCAAGGACCTCTATGACTTCTCCTTGCTGTTTCTTCACTCCATGTTCCAAGGCTTCGCAGACGACGAAGAACTGGTGTCCTATTTGGGATTGGCAAGGGAGATGGCGAGAAAGAAGAAGTCCCACTGGGCTCAGACGAGAATCTGTTTCCTCTTGGGGAAGCTGTGTGCCAAGAAGTATAAGTTCTCCCAAGCTAGGGTCTACTTCGAGGAGGCTCTGAGTGTTGCAAAAGAACAGTTCATGGATATATTCTTGTTAAAAGCTATTTACACCAACCTTGGGGCCATCTATCTAAAGCAGAAGaacaaagataaatatttgACCACTTTTGAGCGGATAGCTGCCTTTCTGATGGGAATTCCCAACTATATCTGCAGCACAGAGCAGGAGCCTGAGATCTTAAAATACATCTTGAAGAAAGCAGTCCTGGCTCAGAACAAGGTGGCCGAAGCAAGGACTTGCTTCCTGTTAGCCCGGCTCTACACAAGACTTAACCAGAGCCAGAGAGCTTTGCCTTTCATTGAGAGACTGCAAATTCTAGCCAAGGAATTCTCTTTAATAAGCAAGGAAAAACCCAGTGACTGTTATCTGGCTTTGGGTCAAGTTTATAGTGAGAAATATCTCCCACACCTATCAGTGAGCTCAATCAAGCATGCTTCCTTGCACTCTAGTGCTACCTTTATGGACTGTTTAAGAGGGATTGGCTTTGTCATAGAAAACACACCAAGGTTGTACAGTTTAGGAAAATGTGGCATATCAGTGCCTACGCAGGTTGCACCTTACCTTCGGCGAGCTCTTTCTTTTACAGTAGACAGGGAAGACCAACAACCTTGCCAGACTCTTTCCTTGTGTTTATCCCAGCTGCATCAACGTCACAGCATGTTCGACAAGGCCATTAGGTACATGCATGCTGTCATTGACAAGAAATCGTGGCCAGTCTCTTCTGAGGCGGTGAATGCTTTAATTTACCTGGCatggctttacattttaaataaccagCACCACTTCGCATTGGATATATTGACCTCCATGCTAGTGTCCTTTTCTGAAACCTGCACTGACCTTCAGAAAGGGGTGGTTTACAACATGAGTGGCATTGCTCTGAAGTACAGCAGTGACATCAAGCAGGCGGCCGAGAGTTATCAGAAAGCAATGCACACGTGCGAGTTCAAGCATAACCAGGCTATCGCACAGGCTAACTTCGGCTTCCTGTGCTTGCATACCGGCACTAGAGACCTAGCAGAGCTGAGCCTGGTGAAAGCAGTGGAGCTTTTTTCGGAGCTTGAGGATGTGACCCACGAGGTTAACTTCATAACGGTCCTGCTTGAGCTTGGCCAGTATTATGTCAGCCGGATGCAACTTGAAAAGGGGAGGATTTATTATGAATGGGCTTTTCTAATGGCGATCAAGGCAAACCTCACTGACTGCCAGCTCCAAGCCACTAGACAGCTGAGCCATTTCTACAACACGGTGTACCCTAACCAGGCCCAATGCATAATCTACAATGAGTaccagctgtctttagttcgaAAGGCAGGTGACAAGAATCAGGAAGGAGAAATACTGGAAACCATTAGCCAACTATACTTCAGTTTAGGCACTGAAAGAGCATATAGATCTGCTCTAGAGTACACCAAGAGGAGCCTTGGCATTTTCATtgatcttaaaaagaaagaaaaagaggcttaTGCATGGCTTCAGGCTGGGAAGATCTACCACATCCTGCAACAAAACGAGCTTGTGGACCTTTACATTCAGGTTGCGCAGGACTGTGGTGTAAGCACTGGAGATATGTACTTTAATTTGGAGCTGCTAGAACTTGCAGGGGATGTGTTTTTCAATGGGTCTCTGGACAGAGACAAAGCCATTCTTTTCTACAGGGACAGGGCGCTTCCGATCGCAATGAAGACGGGCAATGTGAGGGCCCAACTCAGGCTGTCCAACAAGCTGGTGGAGTTACTGATGCAGATGAAGCTCTATGGGGATGCTGTGGAACATGCACAAGCTGCATTGGCCATCAGCATCAGCCTGGGTGAGCAGCTGAACGAGAGGGTGGCGTTTCACCGACTGGCCGCTGTGTACCATTGCCTCAGACAGTACGAGTTGGCGGAGCACTACTACCTGAAAGCACTGTCCCTCTGCTCCTCCCCACTGCAATTCGATGAGGAGACTCTGTACTACGTAAAGGTGTATCAAACACTTGGGGATATGATTTTTTATGATCTAAAGGATCCCTTCGATGCTGCTGGGTATTACCACCTGGCTCTGGCAGCTGCCATGGACCTGGGCAATAAGAAATCTCAGCTGAAGCTGTGCACACGGCTGGCCACTATCTACCACAACTTCCTCATCAACAGAGagctctctcttttcttctaCCAGAAGGCCAGAGTCTTTGCTGCCGACCTGAACGTGCGCAGGATCAACCTGTCACCAGACCAGTATTACCAGAGCGTGTCCCAGTATAAAACATGTCCCTGAGAGCTGGGCCTCTCTGGAAGTGACCGTGTAAGGTAACACAGCTCTAAGCAGATGGAAAGTGTGACATAATGGAGCATGATGGGTGCATTCATTCAGTGCAGTTTGTTTGGTGTGATCTCAAAAGTACTGTGAAAAgaagcatatatttatttttaatctttataggtgcgattttttttaatgtttcagattGATGGATAGTTGTTCAGAAGGTCACTCTGCATGCTTACTGATTTATTGGATGTATTATGGTATTTTACACTGAACCGTAGATCTGTTTTGGGCAGTCATTTTACTTTATAGCGTGAATGTTTGGATTAACACAAATTCTACAGCAGACAAAAAGTATTGTATAAACCTGAACAGGCcttaatattttgtgtatcaGTTGGcattcaaacacaaatatgttCTAAGGTTGTCCAAAGTgcagatacaaaatacaaagcagagagagagagagatctcaACTGCTCATTTAATATCAAGCAACTTCATAGTTCACATGTTAAGGGTTCAGAATATATCCAAGTTCTGGGTTACGGCTTCAGTGACCTTTTGTTACATTACAGACAGTGTTGCATTTTGAACAAGGTCAAGATTAGACTATGGGAATAGtcttataataatgtaaaataatgtctgTACAGGTAAACTGCTGTTAGTAAATGAGAATAGATTGGTTCAGTAATCACATCAGCAGCAAATCGTTTGTGCCTTTGTTTACCACATTGGTCAGCACATTGAAACTGCTTATCATACCTACATTTTAGCAGACTAAACTGCAGGTGGACTGCCTTTAAACATGTATCTACCAATACAAATCAAAaggctttttaaagttttaaatgtagaagtgacattttaaaaaggtgttaATTTTCTTTTGACTCCGTGGTTAGTAAGAATCaagctacattattattattattagtattttccATGTATGTGTGGGTTGagcctaataaataaaaaatttgaGAAtgtaatatcatttttttaatcattaaatgtGCAAATATCATATTCAGAccattgaatacattttctttgtcctGTCGTGTGCAGGTCCTACCTCtgaag

Function

GO: NA

KEGG:

id description
K24313 SH3TC; SH3 domain and tetratricopeptide repeat-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114438 lncRNA upstream 79834 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 162778 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 460381 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 467442 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 734019 13196895 ~ 13259572 (+) False AMCG00017600
TU114570 lncRNA downstream 34828 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 508976 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 790835 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 934127 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 1053041 15062297 ~ 15085398 (+) True G92038
AMCG00017615 mRNA upstream 162772 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 445028 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 475424 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 518780 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017609 mRNA upstream 564417 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017620 mRNA downstream 16380 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017618 mRNA downstream 59518 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 120377 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 126344 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017628 mRNA downstream 458334 14467590 ~ 14473360 (+) True AMCG00017628
TU114078 other upstream 2113092 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4410311 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5239810 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5304185 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5860737 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 27620 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1068069 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1103354 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1857775 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2125769 16135025 ~ 16135316 (+) True G92130

Expression Profile