RNA id: TU114568



Basic Information


Item Value
RNA id TU114568
length 1178
RNA type TUCP
GC content 0.36
exon number 3
gene id AMCG00017620
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14025636 ~ 14039063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTAACAAACCTTTTTAATGATTCTTTGTTAATTGaacttgattgttttgtttttatagtgaTTTATTGTGACCCTCACAGCTGTTAACTTACCTGAGCATGcaaaacatgtttatgtttCAGAGGTTAAAGCAGTGAAGAAACGTTTTATTGGGATACGAATGCTAACTATTACTCCAGTTTTGGTTGAAGAACTGAAGCAACTGAATTCAGATTTCCCTGAGGTCAGCAGTGGCATCTACGTGCTTGAAGTTTTGACAAACTCCCCGGCTCAGAAAGGGGGAATCCAAGAAGGGGATATCATTGTAAAACTGAATGGACGCCCCTTGCTGACAACCAATGATTTGCAGGATGCCCTGACTATCGAATCTCCGCTGCTTCTTGAAGTGCGCAGAGGAAATGACGACTTGCTCTTCAACATTGAGCCTGATGTCATAATGCAGTGATGGTGGACCACAGGCCTTTGCAACTGTGGTTAATGACAGTCCATGTGCTCGGGTTTGCTACATTGAGCTGGGCGTTTCCATAAAGAACATCAAAGGCTTGAAGATAGCGTATGAGAGCACCAACGACGGCactatagtttaaaaaataggGTCCGTCTTATATCTTATTCTTAATTTGTTCTTTGTAGCCATTTAGGTATTTCATGAAAAATCAAAATGTTCACAATGAGTGTAAGCACAGTTTTGGGTAACAATACAGATGTAACATGCTGATGTAactcaaaaaatgtatgtagtaGACATATAACACTTTATTATGATCAAGAAACTTGTATTATTGACACAGCCTTGGAACTTTTAGATTGTatgcaaaattaaatgacaTAGGTTCCGGAAACCTAAAATGTTTATACGTGAAAATGTGCAAGAAAAAGTTGCCGGTCAGATTAAactcttgtttattttgtcttaaaGCAATAAGTAATAATTCTTATAGAACTGATTATTCAGCAATGCTAATAAAAAGGCAGCAGTGAAGTTATTGTGATTAGATTACTCTTATAGCTGcagttttgttgctgttttattaaGGTAAGCTTGTGCTGAAATTTAGAGCCATCATGCCAACCACATTGTTCTGACTGTTGTATTCATCAAAACTGAATACATGTTTACAATTTCTTAAGCTTGTGCAATGAATTGTcctggattaaaaaaacaaaaataaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114438 lncRNA upstream 123119 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 206063 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 503666 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 510727 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 777304 13196895 ~ 13259572 (+) False AMCG00017600
TU114570 lncRNA downstream 5021 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 479169 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 761028 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 904320 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 1023234 15062297 ~ 15085398 (+) True G92038
AMCG00017619 mRNA upstream 27620 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017615 mRNA upstream 206057 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 488313 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 518709 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 562065 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017618 mRNA downstream 29711 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 90570 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 96537 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017628 mRNA downstream 428527 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017637 mRNA downstream 686913 14725976 ~ 14746229 (+) True AMCG00017637
TU114078 other upstream 2156377 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4453596 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5283095 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5347470 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5904022 8132368 ~ 8132854 (+) True G90955
TU114814 other downstream 1038262 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1073547 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1827968 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2095962 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 3562472 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile