RNA id: AMCG00017621


Basic Information

Item Value
RNA id AMCG00017621
length 3543
RNA type mRNA
GC content 0.39
exon number 11
gene id AMCG00017621
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14135600 ~ 14151779 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCACTTCTCTTCCGTCCAGCACGTCTGCTGTAATATGATCGTTGACCGTAATACATGTAATACAGAGACTTTCTTTTTTCATGGGAAGACTGCGAACTGCAAAAAGTTTCCACTGCAATTAAAACCCAGAGTGCATTGAAGTGAGTGCCACATCACGGTGCATATGGGATACAAACGGATCAAAATGAACTCAGTTGtatttgctgtacatttgttggcTTCAGTTGTCTGGTGTGCTCCACCACGTTGTGAACCTGGAGACGCATTTCTAGgaCGATGTCGAACTCAAGTTGAAGACAAACCAAAATGCACAGGAATTTTACTGGGGTATTGTGATGATATGCCTTACTCTAAAACCCTGTTCCCCAActtgctggaaaacaaaaacagagaggaGGTGGAGGCGGGAACCGAATACCTCCTCCTCAGTGTCATTCACACGTTACTGAATGGCGAATGCACTCCTGACATTAGGATGCTGGGCTGCTCCATCATTGCCCCTCGCTGTGAGAAGGACAAGCTCATGAAACCTTGTCGAAGCACCTGCGAATCAGTCAAGAAAAACTGCATGCATGCGTTTGAAGGTATCAATATGGCCTGGCCCTACTTTCTGGACTGTGACCGGTTCTTTGTTGGCGAGGAAGAAGGGTGCTATGATCCTTTGGAAGCATTAAGAGagaAGCAAGAGGTCGCACTTGCGAGCATTTCCCCTGAAGAACCTTCAACTATCATCCAATTCACATACCACACTCATGCTCAGAtggttaacattttaaaaaagacaGCAGCGAGATGCTCAGACATTTCAAGAACGTACAGCATTGGTCGAAGCTTTGAGGGGAAAGATCTTCTCGTAATCGAGTTTTCAGATAACCCTGGGCAACATGAGTTATTGGAGCCAGAAATTAAATTAGTTGCGAACATGCATGGGAATGAGGTGCTCGGGAGGCAGCTCTTGATCTACTTAGCTCAGTATTTGTGTTCAGAGTATCAGCTGGGAAATGAGAGGATCCAGACTCTTATCAACACCACCCGAATCCACCTCTTTCCCTCAATGAACCCTGATGGATATGAGATAGCTGCTGCAGAGGTAGAGGATACCAATGAGCAGGAGCACGATGAAGGTCATAGGTATAATGGTTGGACCAGTGGGAGAGCAAATGCCCAAAACCTCGATCTCAATAGAAATTTTCCAGACCTGACATCGATTGTTTATAGCCGAAGGAGAAGCAAGGCCTACCGCACCGATCACATTCCAATTCCAGACAATTACTGGTTTGGTAAGGTTGCTCCGGAGACATATGCTGTGATGAAATGGATCAGATCTATCCCTTTTGTACTGTCTGCAAGTTTACATGGCGGAGAGTTGGTTGTTTCCTACCCTTATGATTTTTCAAGGCacccagaagaagaaaaaatgttttctccTACACCTGATGAGCAGGTGTTTAAACTGCTAGCCAGGACTTATGCAGATGCACACACCGTTATGTCTGATAACTCGACAGACAGATGTGGTGCATCCTTTGCCAATAAAGGAGGCATTGTCAACGGAGCTTTGTGGTACAGCTTTGCAGGAGGAATGTCTGACTTCAACTACCTCCACACCAACTGTTTTGAGATAACAGTGGAACTGGGCTGTGACAAATTTCCGAGCGAAGATGAGCTGTATCAGGGTTGGCAACAAAACAAGGAACCTCTCTTAACTTATATGGAAGTGGTGCATCGTGGAATAAAGGGGATAGTAAAGGATGAAACAGGTAAAGGGATCAAAGGAGCACGTATTTCAGTGAGAGGAATAAGACATGACATCACTACTGCTGAAGATGGAGACTACTGGAGACTGTTGAATTCTGGCATACATATTATTACTGCTACTGCACCCGGCTACACAAAAGTCATGAAGAAGATTAATCTACCACCAAGACTACAGAAACCTGGACGTGTAGATTTTGTACTACAAAGTATAGTCCAGGAACCAGATATGGTTGTTAATTATCCTACTCAAGACACATATGACCGGTTTGACCCTTATAATCAGTTTGAACGATATAGCCAGAGGGAAAATGGAGAGCCAGGACAGGAGGAGGACAGACAGGAAAAACCTTGGTGGTGGTCTTACTTTGTCATGTCTGGCAACATGGCACCAACCTGGCTTCTGAGGAACTATTAAGTTTCTagagcatttttgtttgttatcaTCCACAGGGTCTTCCAGCTTCTTACCAAGTAACTGCCTTACCAATGTAATTGGCAACTGAGAAACTCTGACGTTTTCAAATAAGATACACCTTAGCTTAGATCTCAAAATATCTGGCCTGCTTTCCTAATATTTTCAACTGAACTTGTTCTCTCTTCATccctaaattaatattttatgctgCCAGCATTCAAAActtgaatttaaacaaatagcTAAAATAAAGTATGCATAATATCTGAGATAGctgaaaaacatacacacagatgtatttttcttgttcagATATGagcaatattttcttttaatttgcataagctgtgttaatattattgtatatgcaACTAAAAGGAGTTTGTATTTCCTGGTCAATGTATCTATTCTGTCTCAcatgttgtttatgtttttatttgcttgtataACAATGAATTTcattacaacaaaatatttcaaaaaggcTTCTGAAAGTTGACTATGGAGAATTCTGGTCAAGAAGAAAAAGTGTGTCCCATAGTACATTGTTGAAGAATCATGCAACAATGACAAACTTTCTCAACTAAATTCCATATATTCAGTATAGATATTGTCAGATGTTGTGCTGGAACACATGTTTagaatggcaaaaaaaaaaaatatatatatatatatatataaaccaaaatataaaaatgcaaacaacaaataaaaggtACTCATACATCTCAGagaatgtacaatttaaatacatcatcACTACATCActtttaatcaaaaataaactacagataGATTCAGGACTAGGAAGACTAGACTCATGTTGTGGATATTGTCCGTAATGATTGCTGAAATAATTTGATCTCTATTTAGGAGGtaacttcatattttaatgCCAAGGAAAATGGAAGTTGTTTGCATAGCTACTCTGTCCCAAACTTTACACAAAATggttagcatttttattttgtgaatttacAGTTGTGTGCGTTGTCATGAGCCTTGCAGGCTGTTCAGATTTAGATGTAGTCTTCCCCACTCAATTTGTGCAACTTGTAAGGGTTAGTGAACACAAGtggacattaaaaataatgtagctAGGGGCAGgcctatgtttttgttttattgtttgtttgtttttttgcttctgtCAAAACTATTTGCCTGAAACCTTCAGACTAAATCCAACtgtatgatttgttttgtttgtttgttttgtttaaatgatgcACTACTATACATTAAGTAAATCAGCATCtgcaaactttattttatatacctTGTTGTTGActgactgaaaatgtttttataaaagttGCAATAAATAAGTATACCCACAGAAAAGTATTGTAACTGTTTTGTTGCCT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13022 CPZ; carboxypeptidase Z

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114570 lncRNA upstream 91072 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 221843 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 304787 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 602390 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 609451 13522641 ~ 13526149 (+) True G91726
TU114661 lncRNA downstream 366453 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 648312 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 791604 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 910518 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 914358 15066137 ~ 15067818 (+) True G92039
AMCG00017626 mRNA upstream 3137 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017618 mRNA upstream 51164 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017620 mRNA upstream 97273 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017619 mRNA upstream 126344 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017615 mRNA upstream 304781 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017628 mRNA downstream 315811 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017637 mRNA downstream 574197 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017636 mRNA downstream 596902 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017640 mRNA downstream 672755 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017641 mRNA downstream 770483 14922262 ~ 14931595 (+) True AMCG00017641
TU114568 other upstream 96537 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 2255101 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4552320 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5381819 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5446194 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 925546 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 960831 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1715252 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1983246 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 3449756 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile