RNA id: AMCG00017622


Basic Information

Item Value
RNA id AMCG00017622
length 2394
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00017622
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14009914 ~ 14017592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGGGAGTGGAAGAATTGAATATGAAGATTgaactaattatatatttcctaATTTTCTACTTGACTTTAATcgTTGCCTATGGAGAAACCCTGCAGCACCTTATGGCCGATAAAGAAACAATAGTGAAAATATCAGCTTCTGGAAACTTAATCCAGTGTTCGGCAGCTGTGGACATCCTTCTACTCATGGATGGCTCATATAGTATTGGAAAGGGGAGCTTTGAAAGGTCAAAACATTTTGCCATGAAAATGGTTGATGCATTGGACATTAATCCTGACCGGGTTCGGATTGGAGTTATACAGTATAGTTCAAAACCCAAGTTGGAATTTGCTCTGAATGTTTACCCTACGAAAGAAGAAGCTAAAGAAGGAATTGGAAGTATTCATTTCAGagGGGGGAGTACAGCAAGTGGCCGAGCCATTAAGCATGTCCTGAGGAAGGGGTATCCGGGGGGGAGAGAGGACACGCCCAAGATCCTCATCCTGCTCACCGATGGAAAATCACAGGACAACGTCATGACTTCAGCCACCTTTGCCAGGAAAAGTGGAGTCAAACTGTTTGCAGTAGGAATCAAATATCCCAAGTGGGAGGTTCTGCACAGCCTGGCCAGTGATCCCAGCGAGatgtatgttttctttgctGAACACTATAATGATGCAGTCAATGGCCTTGTCACAACTTTAACCCAGATATCAGTTTGCAATGATGTCCATCCTACATGTAAAGTGGAGTCGCGTTACTGCCTGAGATCCACTGTAGAGGCTCACAGACAGTTCCAGGGAAATCATGTTTGTTGGAAGAGAAAAAGCAAAGCACAGCATGGAGGACCCATGGCCAGTATATGTCCTCACTATGGATGGAAACGCATCAACACTACAATACAAACTCGATGTCACAGGACAGTGTGTCCAGACCCCTGTGAGTCCGGCCCATGTTTAAATGGAGGCACCTGCATTACAGAGAGCGTGGACGACTTCAGCTGCCTCTGCCCACTAGGATACGGAGGAGACCAGAACTGTGCTGGAAACCGGTACCTTAGGCTAGTGGACTGTGCAGTGGACCTGCTGTTCTTGTTAGATGGATCCTGGAAAATGGGCCTTGAAGGGTTTCTCGTAGCCCGAGATTTTGCTAAGCGATTCGTCCAGACCGTCTTTGCATCTTCAGCCAAAATCCTGGTCGGGGTGGCGCAGTATGGGGACGAGGTGAATATGGAGATCCCCATTGGTGGCTACGGCAGTGTCTCAGAATTGACGAAGGCCATCAACAGCATCCACTTCCAGGGAGGCAATACATTCACAGGGAAAGCGCTGAGCTACATTGCAGAGAAGGGATTCAGAGCTGTGGAGGGTTCGAGAATGGAGGTGCCCCATGTCCTCATAGTCCTCTCTAATGCCAAGTCACATGACGCGGTGACAGCTGCAGCAGAGCATGCCAGGCAGAGGGAGCTCTTCATTCTGACTGTGGGCAGCAGCAGGCTGGTCCCTGAAATGAGCCTCATCACTGGGGATTCCCAACTGGTCTTTACATACGCACAGCCACAAGAGTTATACAAAAAGGTACAAGAAGTGAGAACAACAATGTGTGGATTAAACACCCCAGGTTGCTATTCAAAGACTTTGGATCTGGTATTTGCAATAGATGCATCTAGTAATGTGGGACGACACGACTTTCGTCAGATCAAGATCTTTGTTAAGAATGTTATTTCCCAGTTTGACATTGACGCTGAGCTCACCCAGATTGGAATGGTGATATACAGTGACAAGCCTCGAACCCTGTTCCACCTCGGCCATTTTGACAGCGAtaggaaaatgaagaaaagcatCAGCCTGGCCCCTTACTTAGATGGAAGTGCTCAGACGGGTGTGGCCCTGAAGTATGTTTTGAAAGACACCCTGAGTTTCAAGAAAGGAGCCAGACCAGACGTGCATAAGGTGGTGGTTGTTATTACAGATGGCCAAAGCACAGATGATGTCATTCCCTTTTCTCATCAACTGAGACAAAATGGAGTCACTGTTATCTCAATAGGGCCTGGGGCAGCCCAGTCCCAAAGGCTTCTGACAATAGCAGACAGTCCCAGATTTATGATTCTAGTACCTTCATATGAACACCTGAAGCATTACGCAACAAATCTCGTTCGTAAGATTTGTGAAGACAGCAGGGCTTCTGCCAATGTGTGTCAACCAAACCCCTGCCTGAATGGAGGTGTGTGcctgcagagaaacaaaagcTACAGCTGTGAATGTTACGGCTGGGGAGGAGCGCATTGTGAACTATGACCATCACAGGAAAGTGTTTTCTGGCCGTGACATGCTGAGGAGCTCCTTGGCTGATGCAAACGAAGAAGTGAAACTTGAAGAATTAACAACCACTACCTCCCAACTACTCCCTATCC

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 1353581 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1488700 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1488700 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1500771 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 1509967 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 26529 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 742489 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 782498 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 906801 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1036871 15054463 ~ 15054684 (-) True G92049
AMCG00017624 mRNA downstream 38944 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017617 mRNA downstream 142537 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017616 mRNA downstream 456110 13549425 ~ 13553804 (-) True AMCG00017616
AMCG00017614 mRNA downstream 467776 13540585 ~ 13542138 (-) True AMCG00017614
AMCG00017603 mRNA downstream 705579 13285773 ~ 13304335 (-) True AMCG00017603
AMCG00017623 mRNA upstream 28288 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017625 mRNA upstream 117319 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017627 mRNA upstream 253944 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017631 mRNA upstream 460355 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017629 mRNA upstream 474937 14492529 ~ 14505953 (-) True AMCG00017629
TU113928 other downstream 3512810 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5254007 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5494959 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6013319 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 6177322 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 415566 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 1849355 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2012810 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2012864 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 3451013 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile