RNA id: AMCG00017624


Basic Information

Item Value
RNA id AMCG00017624
length 3920
RNA type mRNA
GC content 0.42
exon number 21
gene id AMCG00017624
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13911085 ~ 13970970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTTATAACCTGGAGGTTGCCAGTGCAGATCCAGGCTGTGTCTCAAGCCAGCTGTGTCCAGAGTCTAGTGGACAAACTACACCTGgcccagcaggTGTTTCAGCAGCAGGCCGTGCACAGCCCCCTGGAGAAGCAGCAGGGCTCCCCTATCCTGTGCCACAACTGTGGGAAGGCCTGCAAAGGAGAGGTCCTGCGTGTACAGAACAAGCATTTCCACATTAAGTGCTTCATCTGCAAAGCCATCCCTCGCATCGTGGCACTCAGCTGTGCCGTACTGCTCTCCAGTGTGAGGATCTCAGTTGCTGTGgtgaattattttctcttttcagtGTGTGGCTGTGATTTGGCGCAAGGAGGATTCTTTGTGCGTCAAGGAGAGTATATTTGTACCTTGGATTACCAGAAACTGTATGGCACACGCTGCTTCAGCTGTGACAAGTTCATCGAAGGGGAGGTGGTGTCAGCCCTGGGGAAGACCTATCACCCTCGGTGCTTTGTCTGTGCCGTTTGCAGacAGCCTTTTCCTCCAGGTGACCGGGTGACCTTTAATGGGAAGGAATGCATTTGCCAAAAATGTACACAGCCATTGCCTGTCAACAGCCCTGCACCAATGCAAGCTGTCAGAATATCTCTTAACATTTGCTCTAAATACAAACAGGTGGATGGGATTCCCTACTGTGAGGTTGACTACCACGCCATGTATGGCATCCAGTGTGAGCACTGCAAGAAGTACATCACTGGCAAAGTGTTGGAGGCAGGGGATAAACATTATCACCCAACTTGTGCAAGATGTGCCAGGTGTAACCAGATGtttggagagggagaagagatgTATCTTCAAGGTTCTTCAATTTGGCATCCACCTTGTAGACAGGCTGCAAGGTCTGAAGAGAAACACAAGGTGACAAGAACTTCTTCTGAGAGCATCACGTCTGTGCCAGCCTCAAGCACCTCTGGATCGCCAAGCCGTGTCATATATGCGAAGCTTGGAGATGAACTTCTTGACTACAAGGATTTGGCTGCACTTCCTAAAATTAAAGCCATCTATAACATCGACCGTCCTGACATGCTCACATACTCCCCGTATATCAGCTACCACTCTGATGATAGATACCATTATGCAGAGtCACCCCAGCTGCTTTCTCCAACACCTActgagGGAGATCAAGATGACAAGTCCCCTCGTCAGAGAAGAGCCTCCAGCCCGAGCTCCAACAGCTCACTGGGATACGGCCGCTACACGCCCTCCCGCTCTCCCCAGCACTACAGCAGACCAGAAACTAGGACAAAAGATAATATCTATAGAAAGCCCCCTATCTACAAACAGCATGTATCAAGGACCTCCTGGCAAGATGGAGATGAGGGAGATGGTAGAAAGATGAAGACAAGCTGGTTGATTTTAAAGGGTGAGATGGATGCCAGATCAGGTGTAGATGACATAGACCCCAGAACATCCACCTGCAGCCTTCCCATTGATTCATCACAGCCCACTTTCCCTTATTCTAAATCCGCGTCCCTACCTGGATATGGCAGAAATGGAATACACAAGGCCCCTGATCTCACTGGATATGAAGCGGACCAGGACTCCAGTTGGGGCACGAGAGAGTACAAGGTTTACCCCTATGAAGTTCTAGCGGTAACAAACAGAGTTCGGGTCAAACTGCCAAAGGACGTGGATAGAACCAGACTGGAGagGCATTTGTCTCCAGAGGATTTTTGGAAAGTCTTTGGAATGACAATCGAAGAGTTTGATCGCTTAGCTCTGTGGAAGAGAAATGATCTAAAGAAGCAAGCACGCCTTTTTTAAATACCAAGGATAGAAATCTTCACTTAGCATCCATCCTGTCTaacaaacaagaacattaaCAATATACATCCTGACTTGCAATATCATCATGGTCTGAATTAAGAAGATTCAGTGGAAGCCAGCAGGGATACAGATTAGCTAAAGTTGCATGGCCAGTTATGTGTGTTTCCTGAGTGTGGGTCCTGGTCCCAGTCATAACCCATCTTCTGCAGAATAAATCAGCTTTTCTATCCTTTTAGCAGTTGGCACTTTGGAAGTGAAGCACCTACATTTAACACAGCTGATTTTATCaaataaattgcttaattgtgcaGCAGAGGAGACTAAGTGAAGGGCAACTGAACGTGTAATTGTAATGGCCAAAAAGATAATAAGGAAAGattaccttttaaaaatgatttaaaaagttGAATAGAAGCACCTTactatattttttcttgcaagTGTACTTTTCAAATTAAGGAAGGCTATATTTTTGGCTGTTTTTCATTGAAGTATTACTTCTTATCCAAGTTGTGAGATTTTGAAATCATGAGTGAGACTTAGACTATGAGTGAGATAAACTGAAGGGAATGCTCTGGGTTATTCCTATCAATCACAGAAATGCCTTACCTTTGGCACAACTGATACAGGAACAGAGGAATGGAGggattattttgtgaaatagtGTCAAATTGAATTCTGAAGTTCGGAAGGAAGACGGCCTCAGTCTTGTGCATGACTTCCACCTTACCAAGCATAAGTATCTGAGAACAAATGCACTTTTCCAGCATTCATTTCTTTGCATCCCTCCTTCACCCTAAACActgcagctccttggctcattccaccCAGTGGGGGGTTCGGATGGCCTCGTCCTCAAGGCCTGGTCACCGGTCCCTTAGTCAAGCGAGTCTatgccaaaataaactctatttacCTTCTATGTATGTCTGTTAGAACTATAGAACTCCTGAAACAGcaataagaacaatacaaaagcTATTCTTAATTTATATTGGGTTATTTTCTGTTATAATGCATCAGTCAGAGTTGCATTCCACACTACAAAACTATCAAACTAGTAAACTATCAAACGCCccacacacaagaaaataataaatctaaaGAAAAGGTATTTTTCAAAGCTTTAGCATTGAGCTAGCAGAAACACTGTTTAAACAATATTGCGTCTCGATACAACATCATCATACCTGAACTTGAATAGGTTTCAACTTTGAAATTAAGTGAATCTATAGCAGTTATtcaataaattattcaataagCTGTATGGGTTCATTCATGTGGGATGAAGGTCGCTGCAGAGGGGCATGTGGCATGTCGGGAAACCTGTGGCTTATTTTTGTGTTCCTGCCAGCTTAAGTCGGCATGATGAACTTTCCCATGATATTCAGATGTGCTGTGTTTGAGAGCACATACGcggaaaatgtaaaaagggcATTACAACTGGCTTGTACgtataaaatatttagtatcCCTATTCTTTCTTTGTTATGAAATGATCACGTTGATCTAAAATTAAAAGCCAGTGTTATCCTAGAAATAGTTAGTCTGAGAGGATTCACACGTCTTGAGGTCCAGGGACAATgctttttgtgcttttgtttgagccaccaattttaaaatgtcacaatggAAGTCCCCAAACTATTTTTCTACACCATGTTTTACTCTTCACATCAGTGTGTGCTCTGCATTCATTACctgtattttacaattgttaAAGCCAAAATGTTATCAACACACAAAAGGTGAAATTCCACACATACTTAAACCAGACTATCATAGAAACCCTTTTAAAGAGGTCCTAGAGCAGctttctatatataaatgtaattttattatcgtatatgaattaataaaagcCTTATGGTAAAATAAACCTATGGAAACTGATCACTGTTATCATAGAAATGTGACAATGTGGGatattcttgttaaaaaaaaaaaacacaactgtaaCATTTCTTTAGACTGAAAACTATTTATTACAATTGGGGTATAATAAAAACCAATCACCAAAAAATAGGTTAATCATAGGACCGTGTGATCACtacaatacactcacctaaaggattattaggaacacctgttcaatttctcattaa

Function

GO: NA

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 1254752 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1389871 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1389871 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1401942 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 1411138 12496291 ~ 12499947 (-) True G91553
TU114571 lncRNA upstream 73151 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 789111 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 829120 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 953423 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1083493 15054463 ~ 15054684 (-) True G92049
AMCG00017617 mRNA downstream 43708 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017616 mRNA downstream 357281 13549425 ~ 13553804 (-) True AMCG00017616
AMCG00017614 mRNA downstream 368947 13540585 ~ 13542138 (-) True AMCG00017614
AMCG00017603 mRNA downstream 606750 13285773 ~ 13304335 (-) True AMCG00017603
AMCG00017601 mRNA downstream 637252 13264231 ~ 13273833 (-) True AMCG00017601
AMCG00017622 mRNA upstream 38944 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017623 mRNA upstream 74910 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017625 mRNA upstream 163941 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017627 mRNA upstream 300566 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017631 mRNA upstream 506977 14477947 ~ 14484818 (-) False AMCG00017631
TU113928 other downstream 3413981 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5155178 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5396130 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 5914490 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 6078493 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 462188 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 1895977 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 2059432 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 2059486 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 3497635 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009320 False 3234 mRNA 0.48 22 NC_007123.7 22680115 ~ 22815847 (+)