RNA id: AMCG00017626



Basic Information


Item Value
RNA id AMCG00017626
length 1020
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00017626
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14129633 ~ 14132463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACTTGGCAGAAATCCTGTTGGCGTTGTGTATTGTTGTGGTAGCGGTTGTCTCTTTGTTATCCAACTTGCTGGTGTTGCTATGTTTTCTGCACAGCACCGAGATTCGCAAGCAAGTCCCCGGCGTTTTCATCATGAACTTGTCTTTCTGCAATCTGCTCATCACGGTTTTAAACATGCCATCCACATTGCTGGGGATCATAAAAAACCGCCAGCCCTTTGGAGACTGCATCTGCCATACTGTAAGCTTTCTGGAGACATTTTTGACCATCAACACGATGCTAAGCATGGCAGCATTGAGCATAGACAAGTGGATTGCGGTAGTGTTTCCCCTGAGTTACTCCAGTAAGATGAGATACAGAGACGCTGTGATCATGGTGTGCTACTCATGGCTCCATTCTCTTACCTTCTCTCTCATCTCGCTGCTCTTTTCTTGGGTTGACTATAACAACATCTATGCATCCTGCACCTTACATTTAAAGGAAGAACGAGAAAGGAGACGGTTTACTGTGTTCACCATCGTGCTCCATGCTACCAGTTTCATGCTTTCCCTACTTATATTATGCTTTACGTacttaaaagttttaaaagttgcacGGTTTCACTGCAAGAGGATAGACATTATTACCATGCAGACTCTGCTCTTGCTGGTAGATATTCACCCAAGTGTTAAACAACGTTGCCTTGTGGAACAGAAAAGGAGGAGACAGCGTGCTACTAAGAAAATCAGCATTTTTATAGGATCCTTTATTATCTGTTTCGCCCCTTACGTTATTACAAGACTGATagagctcctgccatttgtaaGGGTAAATCACCACTGGGGGATTGTAAGTAAGTGCCTCACGTATAGCAAGGCTGCATCGGACCCATTTGTTTATTCACTTTTGCGTCAGCAGTACAAGAAGGTCTTGATTAACATTGTCAACAGGCTGCTGAAGAGAGATCTGTATCCTTCATCTGGACACAACAGCTCTTTAGATACAGAAAATGACTATTGTCTCCAGAGAGTCAGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114570 lncRNA upstream 85105 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 215876 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 298820 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 596423 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 603484 13522641 ~ 13526149 (+) True G91726
TU114661 lncRNA downstream 385769 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 667628 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 810920 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 929834 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 933674 15066137 ~ 15067818 (+) True G92039
AMCG00017618 mRNA upstream 45197 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017620 mRNA upstream 91306 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017619 mRNA upstream 120377 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017615 mRNA upstream 298814 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 581070 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017621 mRNA downstream 3137 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017628 mRNA downstream 335127 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017637 mRNA downstream 593513 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017636 mRNA downstream 616218 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017640 mRNA downstream 692071 14824534 ~ 14825214 (+) True AMCG00017640
TU114568 other upstream 90570 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 2249134 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4546353 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5375852 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5440227 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 944862 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 980147 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1734568 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2002562 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 3469072 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile