RNA id: AMCG00017627


Basic Information

Item Value
RNA id AMCG00017627
length 1011
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00017627
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14271536 ~ 14278165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGACAAAGCAGCAGAAAAACAGACTTCAGCATCTGCCAGAGTGTCCTCGTTTTTTATCGAGAATTTGCTTGCATCCAGCCGGAAAGAAGAAAAGGGGGATAATGCCCGGGATCATATAGAGGAGCCTTTGCGCAGCGGAGTCGCCGTCAGCCATCGCAGCCAGGTCTGCTGCCCAGTGTCCGGCGCCGGCTTCAGGGCGCAGAGCTGTCCTCTCAGGGACTGTCCTTTGCAGTGGCAAGATCGCTCGTCAATATCGGGGAATATGAGCAAAGAAGACGTGCAATGCCGGCCCGCTTCTTTGAAATTCACCATTGATAATATCCTGAATCTCAAGCAGAGCAGCAAGGACCTGGACTCTGTCTCGCACCCTAAACGGCAGCCAGCTGCGGACTGCAAAAATGACTTGCAGTGTAGACTCGACGAGCATCAAGTGAATTGCAGACATGAAAGCGACTACAGACTTCAAGACACggACCCAGCACACACAGACTGTTACACCGCCGCTGCCGATGCTTTAAAGATCATAGAGACACGTCCCCGGGCAGAAAGCACAGACAGTGGCGACGACGGGGCGTcgcaaaataaaaccatcaagaaaagcaaaatgatGACGAAAAAGAAGACGCGCACCATCTTTTCCAAGAGACAAATCTTCCAGTTGGAGTCTACCTTTGACATGAAAAGATACCTGAGCAGCGCGGAAAGGGCTTGCCTGGCCAATTCGCTGCAGCTGACGGAGACGCAGGTGAAAATCTGGTTCCAGAACCGCAGGAATAAATTGAAAAGACAGCTGACCACCGAGCTGGAGGGGCCGAGCGCCGGAGAGCCTTTCGGGGAAGCGGGAAAGACTGCGCAGCTCCCGGCTCTCTACAAAGACAGCAGTAATATCCTGGGCAGATGCCTGCTCCCAATGCCTTTCCCCATCGTGTACCCTGGCAGCAGCACGCCTTATCTATGCTTCTCCAACGCCAGCAAATATTTCAGTCTTTTCGACGGAGATGTATGA

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 227009 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 1615203 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1750322 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1750322 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1762393 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 481916 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 521925 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 646228 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 776298 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 777127 15055292 ~ 15056623 (-) True G92050
AMCG00017625 mRNA downstream 85086 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017623 mRNA downstream 203997 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017622 mRNA downstream 253944 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017624 mRNA downstream 300566 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017617 mRNA downstream 404159 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017631 mRNA upstream 199782 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017629 mRNA upstream 214364 14492529 ~ 14505953 (-) True AMCG00017629
AMCG00017630 mRNA upstream 229408 14507573 ~ 14523275 (-) True AMCG00017630
AMCG00017633 mRNA upstream 252631 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017635 mRNA upstream 321118 14599283 ~ 14600616 (-) True AMCG00017635
TU113928 other downstream 3774432 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5515629 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5756581 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6274941 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 6438944 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 154993 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 1588782 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1752237 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1752291 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 3190440 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile