RNA id: AMCG00017629


Basic Information

Item Value
RNA id AMCG00017629
length 1773
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00017629
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14492529 ~ 14505953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGATTCGGTGGTCGTGGAGGGACAAGTCAAATTCAGAGATGGCAAAAAGGTTTCAAAATCGTCTTTTCTGCgtctttctgttcattttggCATGAGCTGTGTCACCGTGGGATACCCAGATGTCCTTTTTAACTCGTttcatgtgcttttgtttgCCTTGCAGTGGAAGAGTAGGTGGGTTGCGCTCAGAAAGCCCTCCCCTGTAGCAGATTGTCTATTAATGCTTGTGTACAAAGATAAGTCGGACAAAACGAAAGGTCACAAGGAGAGAAACAGCATTACGCTAGAGGACATCTGTGGGCTCGACCCAGGACTTTCCTATGAAGGGGTCAGTCACACCCTTGCAATCATCTGCTTGACGCAGGCAGTGATGCTGGGCTTCGACAACAAGGAGACCATGTATGCCTGGGATATAAGGATCCGCTACAGCCTCGGGGAAGTGCACAGATTTAATGCCGTAGTGCTACCGGGCACCAAACTGGAGAGCGGGCCTGCTACCCTCCATCTGTGTAATAACCTGCTGGTTATTGTCAGGGACCTTCCACCAGCAATAATTGGACAGTGGAAACTGTCAGACCTCAGGAGATATGGAGCTGTCCCGAATGGCTTTGTCTTCGAAGGAGGCACACGGTGCGGCTACTGGGCTGGTGTTTTCTTTCTGTCCTGCGTCGAAGGGGAGCAGATCAGCTTTCTCTTTGACTGTATCGTCCGCGGCATCTCCCCGACCAGAGGCCCCTTTGGACTGCGGCCAGTCCTCCCAGACCCCAATGCCAATCCAGCCTACATGGAAGACAGGGTTAGCCACGAAGCCCTTGAGTTGGAGAAACGCCTCAGTCTCCTGTCTCACTCCAGTCGGCAGAGCAGTACAGCTTCCACCTCAAGTTACAGCACATCAGGTGCACTGGGCGATGACAGAAGCCTGTCCAGCTCCTCTTCTGACACCAGCCACTCAGACACCAGCATCGGGAGCCGCCTGGCGATCTGGCCAGAGCCGCCCATGAGCAGCGCGCCGCTGGAGCCTCAGGGCCTGCCAGCGACGAAGACTGCACTGCAGGGAGAGGAGAAGCTGTACGCTGAAGTCATGCGAGGAACACGGCCACCTCCAAAGCCTCCTCGGTCCAGGAAGCTGCAGGAAATAGGTCGCCAGAGCTCTTCCGACAGTGGGATTGCCACTGGGAGTCACTCCTCATACTCTGGAAGCTTCTCTTCCTACACGGGCAGCCTGGATATCTGCCACGGGGATGAGTTTGGATCCTTGATTAGCCTACCGTTGAACTTTGCATCCGATCAGAGCTTGTGCACTTGCCAGCGTGGCGAGCCTCAGCGGGGTCTGGGCTCCGAGTATCAGGTTCCCAGCTCGCTCAGGCATCTCTATGACACGCCTCGGAGTGTGTTACAAGCGACTGCAACCAGGGACGCACGGAGCAAGAGCCCGGAGAGCACTCTTCCAAAGGACCAGGCAGCTCTGTCCCTCCCCACAGGTATTACAGACACAAAGGCAGCCACACCTGAGCAAAGCTCGGAAAGGAGGCTTGCAAAACCGTCAAGCCAGGAAAGCTCCAGGGACTCCGATGAGATCTACATGGATCTTATTCCAAGGTGGTGTGCTGCACTCCCGCAGGGACAGATGCTGGAATCCAGGAGCAGTGAGGTGGCGCCATCTGCTGGTGTCTCCACAGACCCCTGTGAGATATGCACCCCACCCCCAGGGATCTCAAGAGCTCTGTTTGCTACATGCCCCATCTGTGGAGGATTAAAGGTAGAGTAA

Function

GO: NA

KEGG:

id description
K24038 DOK7; docking protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 448002 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 1836196 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1971315 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1971315 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1983386 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 254128 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 294137 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 418440 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 548510 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 549339 15055292 ~ 15056623 (-) True G92050
AMCG00017631 mRNA downstream 7711 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017627 mRNA downstream 214364 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017625 mRNA downstream 306079 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017623 mRNA downstream 424990 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017622 mRNA downstream 474937 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017630 mRNA upstream 1620 14507573 ~ 14523275 (-) True AMCG00017630
AMCG00017633 mRNA upstream 24843 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017635 mRNA upstream 93330 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017634 mRNA upstream 102957 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017632 mRNA upstream 108608 14614561 ~ 14657488 (-) True AMCG00017632
TU114641 other downstream 12742 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 3995425 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5736622 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5977574 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6495934 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1360994 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1524449 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1524503 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2962652 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3956831 18462784 ~ 18463176 (-) True G92436

Expression Profile