RNA id: AMCG00017630


Basic Information

Item Value
RNA id AMCG00017630
length 2339
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00017630
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14507573 ~ 14523275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAGGTTACCATTAACCAGCCCCGACAAAGACCTTTCCCAGCTGCCACTACCTGAACTAGCATTATTGTGGAGTTGCGTTGCAGCTGGTTGGATCTGTGGGTTGTTTTCTAAGAACTCTTAGCTTTTACTTAAAAATGCCAAACATATAGACATCTTCTGGGAGAAACTTACCGCATGAGCAAGCAAACCACGCTGGATATTAATAATTCCATTATAcagataaatattttacaaaaatccAAACAACAATATGCTCTTTTTAATAACTCTTCTGGTGCCTTCCTGTGTATTTGGCGTTATGGTGCGCACAGTCCAACCGGGCCACGAAATTGCAATTGCTCTGAATTTGCAAAATCAAAGCTATCATAGAGTGCTGACTGAAGACGGGCATGAATGCAAATTCCCTTTTCGTTATGGTGGGAGTATATATCACCACTGCTTGAATGATAGAAATCAGAAACTATGGTGTTCCATTACACATAACTTTGACCGGGATCAGTCGTGGGGATATTGTGCCACTGAAATTTCAGACACACAAGACTCGTGCAAGGAGAACCCATGCCACAATAATGGCCTTTGTACCAACGTCCCTCATTTGAAATCCTACCACTGCATGTGCCCGCAAGAATATAGTGGGAGACAGTGCACACTGGAAAAGTGTTACGATCCAGAGCACCTCCGCTACTATGGGAATGGAGAAACCTGGGGAAGAGTCCACAATCGTAGCGTGGAGCAGTGTACATGCATGCTCGGTGTAATCCAGTGCCAACGCGTTCGCTACACAGCTTGCACCACGAACCCATGTCAGAACGATGCACCGTGCAGAAAGATCATATCAACAGGGAAGACCGTCTGTGCCTGCAGGCCGAGCTATGCAGGGCCACACTGTAGCATCATCCCAAGAAGAAATCCGTATATTCCAAAAGAACGTGACATGGACTGCTTTAAGGAGAACGGCACAAATTACAGAGGCATGGCCAATACTGGCATCTCTGGCAGCAGATGTCTGCCCTGGAACTCAGAGCTGCTGTACCATGAACTGCATTTAGGGACTGTGGAGGACGCTGCCTCTCTGGGCCTGGGGGAGCACTCTTACTGCAGaAACCCAGATAATGATCAGTTTCCCTGGTGTTACGTGCTGAAGAACACACAAATCTCCTGGGAGTACTGTAACATTCCTCCATGTCAGTCAACTGCTTCGCTGTCATTCACAAGGCTTTTACCCAACACTAACATTGAAATGCTATCAGATGAGAATCACACGTCTCAAGACCCTGTCTGCGGAAAGAGACACAAAAAGAGGGTGTTCAGGGGACGGATCATAAAAGGACAGTCTGCCCTGCCTGGCTCCCACCCCTGGATGGCTGCCATATATATCGGGACATATTTCTGTGCAGGGAGCCTGATAAAGCCGTGCTGGGTCGTCTCTGCTGCCCACTGCTTCGCTCACAGCCCCCTGGTTTCCACAGTTCGGGTTGTCTTGGGTCAGCATTTTTACAATGACACAGGTCAAAATTCCAAGTCCTACAAAATTGAGAAATATATCTTCCCTGAAAAGTTTTCGGTGTTCAATCCAACTTTCAATGACATAGTTCTGGTTAaattaaagaaggaaaacaaacattgtgcTAAACGGACTCAATTTGTGCGTCCTATATGCCTGCCCACAAAGCATCTTTCCTTCCCAGACAATTACTGCTGTCAAATTGCTGGCTGGGGACATATGTATGAGAAGGCCGATGCCTATGCCCCTCATTTACAGGAGGGCTTGGTCAACATAATCCCATTTGACCAGTGCTCGAAGCCTGATGTTTACGGGACAGAGGTCAATGAGAATATGCTGTGTGCCAATAGCAATCAGTGTGTGGATGCGTGTCAGGGTGACTCGGGGGGCCCACTGGCCTGTGAAAAGAATGGCGTCTCTTACCTGTATGGCATTGTTAGCTGGGGAGAAGGATGTGGCAACTCAAAGAAGCCTGGAGTCTACACCAGGGTTTCTCAATATGTGGATTGGATCAACAGGGTCACAACACCGATTGTTAAGACCTGATTTATGAACATTTTTTGAATCATGGTTGTGTAGTAATATGTGTGCATTGCCAATGCTGTGAGTATAGAAGAAATCAATCCCACTGAAAAAGTAAATTAGTGGTACGTATTTAGGTATGTAACTAGAGGAAGTTATGGCTACCTActctgaataaaaacatatatgctttttccccctttgttttacagatgaataaaactgaattgtaGTGCATCAAAATATAGGGATACATTTGATGTATAAAATcttctaaaacaaaactattaataaaatgtgctaAATCAATA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09631 HGFAC; hepatocyte growth factor activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 463046 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 1851240 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1986359 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1986359 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1998430 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 236806 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 276815 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 401118 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 531188 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 532017 15055292 ~ 15056623 (-) True G92050
AMCG00017629 mRNA downstream 1620 14492529 ~ 14505953 (-) True AMCG00017629
AMCG00017631 mRNA downstream 22755 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017627 mRNA downstream 229408 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017625 mRNA downstream 321123 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017623 mRNA downstream 440034 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017633 mRNA upstream 7521 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017635 mRNA upstream 76008 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017634 mRNA upstream 85635 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017632 mRNA upstream 91286 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017639 mRNA upstream 141606 14664881 ~ 14676075 (-) True AMCG00017639
TU114641 other downstream 27786 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4010469 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5751666 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5992618 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6510978 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1343672 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1507127 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1507181 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2945330 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3939509 18462784 ~ 18463176 (-) True G92436

Expression Profile