RNA id: TU114641


Basic Information

Item Value
RNA id TU114641
length 1220
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00017631
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14433158 ~ 14484818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAATGTTCCTCAGATTCTGTACCCTTTGCTTTGTTGATTAATTGGTGTCCTTAAACAGGGGTGCCAGTGTTTTAGTCTCAATTATTTATGCATTGCTAGGGGGCATGTTAGTGTTCCCGGCGGATCTGCCAGTGCCAGACAAGCCTCGTGGTGATGGAGTAACCTATGTTAATATTCCTGTCAGCCCAACGTCTAAGAAGCAGCTTCATTATATGGAATTAGAGCTGCAGGACCCTAGCTCTGGAGTTAGAGGAGGCGGCTCCACCAAGTACGCTCAGATTGATATCACTGCCACAGAGACGGCCCACAAAGTGGGGACCCAGCATGCGCAGTTCAGAGAGGAGCGACTGCAGGAACTTGAACAGAAGAAGAAGGGTGCTTTACAGTGACCTAATGGTGGAACGTCCATCTCAAGATCCATACATTGTCCGGATTGCCTGCTCTACAGGAATATTGCTTCGGGCAGTTCGATAAAGGCGATGGAAGCGCACTTGGTTCCAGAGTACGGTGCATCGTGTCAATGCAAGGGTTATTGATGCATGGTTCTAGCAGGCAGTTTGGCTCTTCCATTTGACACAACAGGCAATTTTATGTACCTTCAACAGACGTTCCTGCCAAGTTGTGTGTGAGTTGTTCAAatagaatgtattaaaaaccaGATACATTTTCAGGCTTGACATTCACAGAAATGTTGTCAATATTCACTTCTCTCCTCATGATTTTCTATATTTCCACAGACCGGCTCCACCTTGGAAATTATCCCCATCTCTGTTGCGATCCAGCTAGTGCTACTTACCTGTAAATTGTCTGAATTCACCATGTGTTCAAGTGGTATTGCAATCTGTGGCCTCTGCCATCGCAGATGGTTCATTATCTGACAAAATGCTATGTGTCTGTGAACAGTGTGGAGATATGCCTGTTGGATAAACTGAGTCATCCCTTTTTGAGCCCTGGAGACTTCAATTTGTGGTGtcttttaaatctatataaatCAAGTAACCAAGTATAAAATAAGTGTACTGTTGGATTCTGTCAAGTTTACACCCAGGAGGGTAGGGATTGAATTATGTTTATAGTTGAGAGTTTCTTGAAATCAAAAGTTAGAGAGCATGGCACCATCAAACCCTGAAGTATTCCAagttaaaatgacaattaaaaaaatcaaattaaaacccTAAAAAAATACTAACATAGAGGCATGTNNNaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114571 lncRNA downstream 388631 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 1776825 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1911944 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1911944 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1924015 12506627 ~ 12509143 (-) True G91556
TU114757 lncRNA upstream 280294 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 320303 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 444606 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 574676 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 575505 15055292 ~ 15056623 (-) True G92050
AMCG00017627 mRNA downstream 154993 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017625 mRNA downstream 246708 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017623 mRNA downstream 365619 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017622 mRNA downstream 415566 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017624 mRNA downstream 462188 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017629 mRNA upstream 12742 14492529 ~ 14505953 (-) True AMCG00017629
AMCG00017630 mRNA upstream 27786 14507573 ~ 14523275 (-) True AMCG00017630
AMCG00017633 mRNA upstream 51009 14530796 ~ 14552257 (-) True AMCG00017633
AMCG00017635 mRNA upstream 119496 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017634 mRNA upstream 129123 14608910 ~ 14612595 (-) True AMCG00017634
TU113928 other downstream 3936054 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5677251 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5918203 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6436563 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 6600566 7830885 ~ 7832592 (-) True G90937
TU114907 other upstream 1387160 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1550615 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1550669 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2988818 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3982997 18462784 ~ 18463176 (-) True G92436

Expression Profile