RNA id: AMCG00017637


Basic Information

Item Value
RNA id AMCG00017637
length 2966
RNA type mRNA
GC content 0.39
exon number 13
gene id AMCG00017637
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14725976 ~ 14746229 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCACACCTTGCTGCCGGTGACCCAGGTGCAGGCAGCTCCAGCCCGGGGCCCAGCTCTGGTGTTTACGGCCTCAGATCACTACCAGGCTGAGGGCCACATCGTGCGCAGATCACTGGATACCCGACACATTGGCCAGCAAGTCTCCCTTGTGCTGGGCATTCCCACCGTGAAGCGAGAGAAGCAGAGCTACCTTCTTAGCACACTGAGCTCACTTTTGTATGATCTGACTTCAGAGGAAAAGGACGATTGTTTAATAATTATCTTCGTTGCTGAGgcTGATGCCCAGTATGTTTACAGTGTAGCAGATGATATTAAGAAAAAATTTCCACATGAAGTGCAGTCTGGTCTTATGGAAGTTGTGTCCCCGTCTCCTTATTTCTACCCGGACTTCAGCAATCTGAAGGAAACATTTGGAGACTCAAAGGAAAGAGTAAAGTGGCGAACCAAACAGAATTTGGATTACAGCTTCTTGATGCTCTACGCAAAGGATAAAGGGTCTCTTTATGTACAGTTGGAGGATGATATTGTGGCAAAACAAGGATATTCGCAGACCATGAAGGAATTTGTGCGTCATCAATCATCCGACGATTGGCTGATTTTAGAATTTTCACAGCTGGGGTTTATAGGTAAAATGTTCAGGACATCAAATCTTCCTTTTATAGTGGAATTCATTTTGATGTTCTACAAAGACAAGCCCATTGATTGGTTGCTGGATCATATATTGTGGGTTAAAGCCTGTAACCCAGAGAAGGATGCAATACACTGCAGCAGACAGAAGGACAACCTGAGAATCCGTTACAAGCCATCCCTTTTTCAGCATGTTGGACTTCACTCGTCGCTGCATGGAAAAATTCAAAACTTAAAAGATAAAGATTTTGGAAAGCAGACACTGTACATAAGCCACTCCAACCCACCAGCAGAAGTTACCACTAGTCTGTCTGCCTACCAGAGCCACACTCTCGACCGGGCCTACCAGGGAATGGATTTCTTCTGGGGCCTCACACCAGTTGCTGGGGACTACATCAAAATCAAATTTGTCAAGCCTTTGATAGTAAAAGGATACCTTTTTAAAAGTGGAAATATTGAGACTAACGGAGACCAGTTCTACAACACAACTGTGGAAGTTCTTTGTGAAAATagttCAGTTTTGAATAATGCACATAATGGACAGATGTCTAAATATGAGACAACCACTGATGGCTATTTAAGAATAGGCGCCTTTGAGGATGGTGTCGCTGCAGGAGAGATTCCCCCTGCATTACAGAACATATCTGCCATTCGGTTGTTAATCCACTCCGATTCAGATGTCTGGGTTCTGCTGAGTGAGATACTCATTAAGGTGTAAAAAGAAGAACCACCAAAACAAAAGGGGTAAATACTGAAGCATTACATGTGAAGCCCAGTTCCAGGAACAGTGGACACCTGTACAAGGGTACCACCTAGTGGAGGAAGCCAGAGAAAATGGGTTTCAGCTTGCTGCCcataacatacacaaaaaatatgaagctgaaaatgtgaacCAGAGGAAACTTGCCAATTCTGCACAACAAAATGAATATTTGAaggcatttttgtattgcttggAATATGGTGTCATGTCAAACCCACTTCGAtggggatttttgtttttaggatttattttgaatgactgtaaaaaaaaaaaaaaaactggggtTGGAAATGCTCTGAAGGCTTTACATGTGTCATGATGGAGAAGGATTCTAAACATTAAACTGGAAAAGCCTTATGAAGAGAGATTGAagaagaaacatgttttaaattaaaatatgaagttgGCAAAGGACCTATTTAAGATCAATGTGTGCTATAAATACAACTctttagttaaaaataatattacaaaatatgttttttgataGTTAATATgtaactttctctctctctatgtatatatgtgtgtgtgtaatatatatgtgtgtgtgtgtgtatatatatatatatatatgcgcgcgtgtgtgtgtgtgtgtatatatatataatatgagaGAGCGATCACTTGCATTGTTTACTGTATTCAATTTGCAATACATCTTGCTCTTCCTCTCTTTTAGTGTAGTTGCTATATAGATAAAGCTATTATTTCTTGCAATGTTAACTGCATCTGCCCTTcaacagtgtgtttatttaacagTGCGCAGGTGCTCAAAACCAAAATAGACATGCAAAACCCAAAATAAATACCAGGCTCCTTATTGAGCCTAAAATTACATACACAGGTCCCTACCTAAACATGCACTAATAATAAACTCAAGCAGTCAAGTCCCAAATCTGTATCCGTATTCAAACCCAAGTTCAAAGTCTGTTTCTGTGATTGCAACTGTTCTTGACCTCTGGCTCTGTTCACTCTCCACACACTCCCATGCTTTCCTCTCCGCCTAATAGCTTCCAGTTTTATTGAGTGGTGGAGCCAGTCATGGTGGGGGACAGCGCTCAGGTCCCCCAGGTAATTTTCCTCCCCCGGGGTCCGGGGAGGTGCTGGGCAGTTCTTAAATCCCACACATATCTATGTAtactttgtaaatgtattaaacttgtgtaggaaataaatgtcaaatatttacatgctCATCAAGACTAACTCattgtttgatatttatttgcTGTAATAAGAGATTGTGTGTGTCATTAGAGATCAAGAGAACAcaatcaagtaaaaaaaaacaatgttacaaaATTGTTAGAATTGTTATAACGCACATTGGTAAACACAAAGATGCAAATCaaattcttttttaaatacatcctGTATTCAACTGAGAAAAGTGGCAAATGTTTAACGTTTGAAAATCAATTCCGTCTGACTGTAGTAATGCCAAGAAATATGaaggctttctttttttttttttaagttaaacattttggattctatttttctttatagaggaaacaatgtttttagttttgtttgagaaccattatttaataaaattaattttacaatcA

Function

GO: NA

KEGG:

id description
K00738 MGAT4A_B; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114661 lncRNA upstream 186872 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 681448 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 812219 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 895163 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 1192766 13528781 ~ 13533210 (+) True G91727
TU114761 lncRNA downstream 53862 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 197154 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 316068 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 319908 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 341903 15088132 ~ 15090475 (+) False AMCG00017651
AMCG00017628 mRNA upstream 252616 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017621 mRNA upstream 574197 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017626 mRNA upstream 593513 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017618 mRNA upstream 641540 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017620 mRNA upstream 687649 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017636 mRNA downstream 2452 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017640 mRNA downstream 78305 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017641 mRNA downstream 176033 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017649 mRNA downstream 234335 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017642 mRNA downstream 275502 15021731 ~ 15033505 (+) True AMCG00017642
TU114568 other upstream 686913 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 2845477 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5142696 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5972195 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6036570 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 331096 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 366381 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1120802 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1388796 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2855306 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile